| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000816794 |
| Family | PL4 |
| Protein Properties | Length: 680 Molecular Weight: 77440 Isoelectric Point: 5.3075 |
| Chromosome | Chromosome/Scaffold: 000698289 Start: 465 End: 2504 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 55 | 658 | 0 |
| KMLIHQTQNTVELNNGIVRVKFSNPGGDIIGIQYKGIDNVLETKNHPSNRGYWDLVWENGLDRLQGTTFKIVTSTADQIEISFNKTYDVSLGDRPLPLNV DKRYIMQRGRAGFYAYAIYERLQGWPALRIDQTRLALKLRQDKFQFMAVSDDRQRFMPTTEDRSGDHAQTLAYREAVLLTNPSNPEFKEEVDDKYQYSSD VKDIKVHGWISTDDAIGLWMITPGTEFRSAGPFKQELTSHVGPTALTVFLSGHYVGKDVGLTFADGEAWKKVFGPVFVYLNSDVPSSNAASSLWENAKEE MYEEVKSWPYNFTQSEDYPSSGERGSVAGLLLIRDSYINESLVSASYAYVGLAASGDAGSWQTECKGYQFWTQADNQGYFYMKDVRPGNYSLYATVPGFI GDYKYEYDITIEPASEIKLTNLTFEPPRNGPTLWEIGIPDRSAVEFNIPDPYPSLVNRLFTNNSANKFRQYGLWERYEDYYPDHDLIYTIGTNNYSDDWF YAHVTRNINGTYEATTWQIVFQLENVWSTGNYTLQLAXASATYAELQVRFNNQNDTPHFSTGLIGRDNAIARHGIHGLYWLFSVDVPSYRLQXGYNTIYL TQSR | |||
| Full Sequence |
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| Protein Sequence Length: 680 Download |
| MEKVRQWRRW GILSSVALLG LLFFFPTNNG ASKTTTISGR RAQSSVISNE LNFNKMLIHQ 60 TQNTVELNNG IVRVKFSNPG GDIIGIQYKG IDNVLETKNH PSNRGYWDLV WENGLDRLQG 120 TTFKIVTSTA DQIEISFNKT YDVSLGDRPL PLNVDKRYIM QRGRAGFYAY AIYERLQGWP 180 ALRIDQTRLA LKLRQDKFQF MAVSDDRQRF MPTTEDRSGD HAQTLAYREA VLLTNPSNPE 240 FKEEVDDKYQ YSSDVKDIKV HGWISTDDAI GLWMITPGTE FRSAGPFKQE LTSHVGPTAL 300 TVFLSGHYVG KDVGLTFADG EAWKKVFGPV FVYLNSDVPS SNAASSLWEN AKEEMYEEVK 360 SWPYNFTQSE DYPSSGERGS VAGLLLIRDS YINESLVSAS YAYVGLAASG DAGSWQTECK 420 GYQFWTQADN QGYFYMKDVR PGNYSLYATV PGFIGDYKYE YDITIEPASE IKLTNLTFEP 480 PRNGPTLWEI GIPDRSAVEF NIPDPYPSLV NRLFTNNSAN KFRQYGLWER YEDYYPDHDL 540 IYTIGTNNYS DDWFYAHVTR NINGTYEATT WQIVFQLENV WSTGNYTLQL AXASATYAEL 600 QVRFNNQNDT PHFSTGLIGR DNAIARHGIH GLYWLFSVDV PSYRLQXGYN TIYLTQSRTW 660 GPFAGLMYDY IRLEGPPPK* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd10316 | RGL4_M | 1.0e-26 | 377 | 476 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10317 | RGL4_C | 2.0e-45 | 488 | 674 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-62 | 67 | 337 | 282 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 2.0e-76 | 59 | 245 | 192 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002308510.1 | 0 | 13 | 676 | 12 | 671 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002319997.1 | 0 | 67 | 677 | 3 | 618 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527229.1 | 0 | 60 | 676 | 49 | 667 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527245.1 | 0 | 65 | 676 | 2 | 618 | lyase, putative [Ricinus communis] |
| RefSeq | XP_002527353.1 | 0 | 63 | 677 | 13 | 634 | lyase, putative [Ricinus communis] |
