Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000818931 |
Family | GH28 |
Protein Properties | Length: 252 Molecular Weight: 26565.4 Isoelectric Point: 4.4888 |
Chromosome | Chromosome/Scaffold: 006973115 Start: 4174 End: 5146 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 2 | 214 | 1.70006e-41 |
QCSNVHVLNISVSAPPDSPHTVGIVPDSSDTVCIEDCIIGMGYDAIALKSGWDEYGIAYGRPTTNVHIRHVTLQSATGSSLALGSEMSGGISNVHVEQVR LHNSISGIQFRTTKGRGGYIKDIIISDVEVENIYMAFGAXGQFGSHPDDKYDPNALPVLDHITLQDVVGTNITIAGCFTGIEESPFTSFCLSNISLSLNS ASPTTWDCSYVSG |
Full Sequence |
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Protein Sequence Length: 252 Download |
MQCSNVHVLN ISVSAPPDSP HTVGIVPDSS DTVCIEDCII GMGYDAIALK SGWDEYGIAY 60 GRPTTNVHIR HVTLQSATGS SLALGSEMSG GISNVHVEQV RLHNSISGIQ FRTTKGRGGY 120 IKDIIISDVE VENIYMAFGA XGQFGSHPDD KYDPNALPVL DHITLQDVVG TNITIAGCFT 180 GIEESPFTSF CLSNISLSLN SASPTTWDCS YVSGSSESVF PEPCSDLNTS YSNPSSAHIS 240 LLTGNGKAVV L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-8 | 3 | 134 | 136 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-11 | 2 | 171 | 177 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN03003 | PLN03003 | 4.0e-12 | 2 | 134 | 135 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 1.0e-13 | 2 | 134 | 135 | + polygalacturonase ADPG | ||
COG5434 | PGU1 | 5.0e-20 | 3 | 178 | 182 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22951.1 | 0 | 3 | 224 | 206 | 427 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273305.1 | 0 | 3 | 224 | 208 | 429 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002314352.1 | 0 | 1 | 233 | 204 | 435 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002328589.1 | 0 | 1 | 248 | 206 | 447 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516982.1 | 0 | 3 | 251 | 206 | 454 | Polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.0000000000004 | 4 | 194 | 222 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.0000000000004 | 4 | 194 | 222 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.0000000000004 | 4 | 194 | 222 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.0000000000004 | 4 | 194 | 222 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CU494711 | 221 | 10 | 230 | 0 |
CO069530 | 242 | 6 | 247 | 0 |
HO797483 | 247 | 1 | 247 | 0 |
DV129304 | 226 | 3 | 227 | 0 |
CX288835 | 186 | 3 | 188 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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