Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000821000 |
Family | GT9 |
Protein Properties | Length: 464 Molecular Weight: 51364.8 Isoelectric Point: 7.1509 |
Chromosome | Chromosome/Scaffold: 006807493 Start: 4632 End: 7554 |
Description | NDH-dependent cyclic electron flow 1 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT9 | 194 | 435 | 1.7e-21 |
LKSRYYDMILSTKLAGLGHGIFLFMTTARERVSYIYPNVNAAGAGLFLSETFRPNGMNLAEGGYNMYHQMVDWLGRPVRDVPRQALPPLKISISKKLKQT VESKYKKAGVDKGKYIVIHGLESDSKASMQSKGDSDSLLPIETWAAIVRGIREFRPVFVIPHEKERENVEEIVGEDTSIVFITTPGQLAALINDSAGVIT TNTAAIQLANARQKPCIALFGSAEKGKLFVPNAEEKNCVIVS |
Full Sequence |
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Protein Sequence Length: 464 Download |
MATTTSLLPK SFPPFLTNAP SFPSTLFTKL SSFNPQDHPH CTKRPNLQTN AKKKNPWLDP 60 FDDGEDPDME YGSLFADGKQ DEDDRPPENP DNPYGFLKFP MGYSVEVASL ALKVRGDVRR 120 CCCVVSGGVY ENLLYFPVIQ LLKDRYPGVQ VDVVASARGK QAYELNKNVR WADVYDPDDH 180 FPEPAEYTDM VGLLKSRYYD MILSTKLAGL GHGIFLFMTT ARERVSYIYP NVNAAGAGLF 240 LSETFRPNGM NLAEGGYNMY HQMVDWLGRP VRDVPRQALP PLKISISKKL KQTVESKYKK 300 AGVDKGKYIV IHGLESDSKA SMQSKGDSDS LLPIETWAAI VRGIREFRPV FVIPHEKERE 360 NVEEIVGEDT SIVFITTPGQ LAALINDSAG VITTNTAAIQ LANARQKPCI ALFGSAEKGK 420 LFVPNAEEKN CVIVSSKTKK LKDIDTEAVK NALPIFNVSL ALV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR02193 | heptsyl_trn_I | 0.001 | 303 | 420 | 123 | + lipopolysaccharide heptosyltransferase I. This family consists of examples of ADP-heptose:LPS heptosyltransferase I, an enzyme of LPS inner core region biosynthesis. LPS, composed of lipid A, a core region, and O antigen, is found in the outer membrane of Gram-negative bacteria [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides]. | ||
pfam01075 | Glyco_transf_9 | 0.0001 | 194 | 415 | 237 | + Glycosyltransferase family 9 (heptosyltransferase). Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core. | ||
cd03789 | GT1_LPS_heptosyltransferase | 3.0e-6 | 333 | 415 | 89 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
cd03789 | GT1_LPS_heptosyltransferase | 1.0e-6 | 137 | 227 | 92 | + Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS). Lipopolysaccharide (LPS) is a major component of the outer membrane of gram-negative bacteria. LPS heptosyltransferase transfers heptose molecules from ADP-heptose to 3-deoxy-D-manno-octulosonic acid (KDO), a part of the inner core component of LPS. This family belongs to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
COG0859 | RfaF | 2.0e-23 | 133 | 453 | 335 | + ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0008152 | metabolic process |
GO:0016757 | transferase activity, transferring glycosyl groups |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18065.1 | 0 | 1 | 463 | 1 | 471 | unknown [Glycine max] |
EMBL | CBI25170.1 | 0 | 4 | 462 | 3 | 465 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264393.1 | 0 | 44 | 462 | 12 | 430 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002332075.1 | 0 | 3 | 463 | 2 | 465 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512720.1 | 0 | 4 | 462 | 3 | 465 | conserved hypothetical protein [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO796601 | 469 | 1 | 464 | 0 |
DV161543 | 296 | 130 | 425 | 0 |
DW000427 | 279 | 130 | 408 | 0 |
GO794001 | 287 | 136 | 418 | 0 |
GE612647 | 255 | 130 | 384 | 0 |
Orthologous Group | |||||
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Species | ID | ||||
Oryza sativa | LOC_Os08g17390.1 | ||||
Panicum virgatum | Pavirv00029492m | Pavirv00049966m | |||
Ricinus communis | 30131.m006851 | ||||
Setaria italica | Si013672m | ||||
Sorghum bicolor | Sb07g016320.2 | Sb07g016320.1 |
Sequence Alignments (This image is cropped. Click for full image.) |
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