Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000842179 |
Family | GT5 |
Protein Properties | Length: 590 Molecular Weight: 64325 Isoelectric Point: 5.2133 |
Chromosome | Chromosome/Scaffold: 017864208 Start: 10709 End: 13987 |
Description | starch synthase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT5 | 288 | 586 | 0 |
NVILVAVECAPWSKTGGLGDVAGALPKALARRGHRVMVVAPLYGDYAEPQHSGVRKVYKVAGQDMEVAYFQAYIDGVDFVFIESAVFRHMENNIYAGKRE DILKRMVLFCKAAVDVPWLVPCGGACYGDGNLAFIANDWHTALLPVYLKAYYRDNGLMIYTRSILVIHNIAHQGRGPVADFSFVDLPGHYLDLFKLYDPI GGEHFNIFAAGLKTADRVVTVSHGYSRELKTVEGGWGLHGIINENDWKFRGIVNGIDTKDWNPQHDAFLKSDGYTNYSLETLKTGKAQCKAALQKGAGF |
Full Sequence |
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Protein Sequence Length: 590 Download |
MASIGSLPCI IETKTDSSVL VHSIINRRLR FPFLTNRPRS SIEVSGINAS AGGSSEAVGM 60 CRGQNDWCSR GNLWRIKPLH AIGKSSAQGE DGGEPEDPLQ ATIEKSKKVL ATQRELLQQI 120 AERRKLLSSI QSGDISQEEE EASFEQGNES FSNAKSSSSS GDDTVEDQIG SIASSGYEHS 180 TEEKEFXTVP SALSRGLDEI EKDHGDALPF NKSPIELESS KHVSTDSSKT EWSDGLPSFL 240 TNLESSTLKD EELVDLKEPS VEEVHEGAAG FTSEDVKPPP LAGPNVMNVI LVAVECAPWS 300 KTGGLGDVAG ALPKALARRG HRVMVVAPLY GDYAEPQHSG VRKVYKVAGQ DMEVAYFQAY 360 IDGVDFVFIE SAVFRHMENN IYAGKREDIL KRMVLFCKAA VDVPWLVPCG GACYGDGNLA 420 FIANDWHTAL LPVYLKAYYR DNGLMIYTRS ILVIHNIAHQ GRGPVADFSF VDLPGHYLDL 480 FKLYDPIGGE HFNIFAAGLK TADRVVTVSH GYSRELKTVE GGWGLHGIIN ENDWKFRGIV 540 NGIDTKDWNP QHDAFLKSDG YTNYSLETLK TGKAQCKAAL QKGAGFTTP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0297 | GlgA | 4.0e-58 | 287 | 582 | 306 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
pfam08323 | Glyco_transf_5 | 8.0e-67 | 289 | 531 | 251 | + Starch synthase catalytic domain. | ||
PRK00654 | glgA | 8.0e-73 | 287 | 582 | 306 | + glycogen synthase; Provisional | ||
cd03791 | GT1_Glycogen_synthase_DULL1_like | 2.0e-90 | 288 | 587 | 307 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
TIGR02095 | glgA | 2.0e-101 | 287 | 585 | 303 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAF13168.1 | 0 | 1 | 589 | 1 | 562 | AF173900_1 granule bound starch synthase II precursor [Manihot esculenta] |
GenBank | ABV25894.1 | 0 | 1 | 586 | 1 | 559 | starch synthase isoform II [Manihot esculenta] |
EMBL | CBI22230.1 | 0 | 1 | 586 | 6 | 613 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002278470.1 | 0 | 1 | 586 | 1 | 580 | PREDICTED: similar to starch synthase [Vitis vinifera] |
RefSeq | XP_002531856.1 | 0 | 1 | 586 | 1 | 562 | starch synthase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vuf_A | 6.99949e-42 | 287 | 586 | 10 | 321 | A Chain A, Raphanus Sativus Anionic Peroxidase. |
PDB | 3vue_A | 6.99949e-42 | 287 | 586 | 10 | 321 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 1rzv_B | 5e-24 | 287 | 578 | 1 | 279 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzv_A | 5e-24 | 287 | 578 | 1 | 279 | A Chain A, Crystal Structure Of The Glycogen Synthase From Agrobacterium Tumefaciens (Non-Complexed Form) |
PDB | 1rzu_B | 5e-24 | 287 | 578 | 1 | 279 | A Chain A, Crystal Structure Of The Glycogen Synthase From A. Tumefaciens In Complex With Adp |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777841 | 397 | 83 | 470 | 0 |
HO777841 | 119 | 468 | 586 | 0 |
FG198006 | 252 | 309 | 560 | 0 |
FG136769 | 250 | 317 | 566 | 0 |
FG140735 | 245 | 277 | 521 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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