Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000845683 |
Family | GH28 |
Protein Properties | Length: 252 Molecular Weight: 26997.7 Isoelectric Point: 9.55 |
Chromosome | Chromosome/Scaffold: 013345404 Start: 3424 End: 4264 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 58 | 248 | 0 |
STAXGGATLYVPRGSFLIKPVVFSGPCRSSRVVFQMDAAASLVAPTNYWELGNTGTWILFIRVTGLLVYGGTVDARANSYWQCRRSGKSCTAGSRSVALY WCNNAVVRGLRMMNSQIMHMAIDNCKNVAVRNVYIRAPSGSPNTDGIHIEASTGVTITASSIMTGDDCISIGEGAKNLWIERIACGPGHGI |
Full Sequence |
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Protein Sequence Length: 252 Download |
MAPKIVVILV FLISLFESSS NYYAVGASYN VARYGARGDG RTDSTKAFLR AWSLACSSTA 60 XGGATLYVPR GSFLIKPVVF SGPCRSSRVV FQMDAAASLV APTNYWELGN TGTWILFIRV 120 TGLLVYGGTV DARANSYWQC RRSGKSCTAG SRSVALYWCN NAVVRGLRMM NSQIMHMAID 180 NCKNVAVRNV YIRAPSGSPN TDGIHIEAST GVTITASSIM TGDDCISIGE GAKNLWIERI 240 ACGPGHGIRY T* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN02793 | PLN02793 | 5.0e-50 | 31 | 248 | 225 | + Probable polygalacturonase |
PLN02218 | PLN02218 | 5.0e-53 | 30 | 248 | 226 | + polygalacturonase ADPG |
PLN03010 | PLN03010 | 4.0e-56 | 26 | 248 | 231 | + polygalacturonase |
PLN02188 | PLN02188 | 2.0e-61 | 5 | 248 | 253 | + polygalacturonase/glycoside hydrolase family protein |
PLN02155 | PLN02155 | 5.0e-77 | 3 | 248 | 246 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181916.1 | 0 | 28 | 248 | 30 | 245 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | NP_181917.1 | 0 | 5 | 248 | 7 | 243 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002275740.1 | 0 | 7 | 248 | 4 | 240 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002331632.1 | 0 | 4 | 248 | 3 | 240 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529095.1 | 0 | 4 | 248 | 3 | 240 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0.00000000002 | 30 | 231 | 29 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.00000000002 | 30 | 231 | 29 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0.00000000002 | 30 | 231 | 29 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0.00000000002 | 30 | 231 | 29 | 268 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1ib4_B | 0.000002 | 136 | 248 | 89 | 204 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |