Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000845685 |
Family | GH28 |
Protein Properties | Length: 406 Molecular Weight: 43090.3 Isoelectric Point: 9.4157 |
Chromosome | Chromosome/Scaffold: 013345404 Start: 14874 End: 16976 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 65 | 393 | 0 |
SACSSGQGNAVMYIPKGRFLLKAVVFRGPCKTRQVTVRIDGTLVAPTDYRALGNSGYWILFIEVTGLRVLGGSLDARGVAFWACRKSGKSCPVGARSITF NWANNVLVSGLTSINSQATHLVVNSCNNVVVRNVKIIAPSESPNTDGIHVQSSTGVTITGSILQTGDDCISIGPGTRNLYMSNIKCGPGHGVSIGSLGKD LKEDGVQNVTLTNAVFSGSDNGVRIKSWARPSTGFVKNILFQNIIMRNVKNPVIIDQDYCPNNQGCPSMSSGVKISQVTYRNIQGTSGTAEAVTFECSPS TPCTGIRLQDIKLTYLNKATTSSCKNISG |
Full Sequence |
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Protein Sequence Length: 406 Download |
MAYTSSFCGN IHNYYVAAVM LFFTISILFL QSSNAAAVSY NVMKFGARAD GKTDSTQAFV 60 KAWASACSSG QGNAVMYIPK GRFLLKAVVF RGPCKTRQVT VRIDGTLVAP TDYRALGNSG 120 YWILFIEVTG LRVLGGSLDA RGVAFWACRK SGKSCPVGAR SITFNWANNV LVSGLTSINS 180 QATHLVVNSC NNVVVRNVKI IAPSESPNTD GIHVQSSTGV TITGSILQTG DDCISIGPGT 240 RNLYMSNIKC GPGHGVSIGS LGKDLKEDGV QNVTLTNAVF SGSDNGVRIK SWARPSTGFV 300 KNILFQNIIM RNVKNPVIID QDYCPNNQGC PSMSSGVKIS QVTYRNIQGT SGTAEAVTFE 360 CSPSTPCTGI RLQDIKLTYL NKATTSSCKN ISGTSTGLLM PDSCI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 8.0e-84 | 67 | 391 | 328 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-91 | 29 | 401 | 380 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 6.0e-95 | 42 | 404 | 372 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-102 | 19 | 404 | 399 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 9.0e-160 | 21 | 405 | 387 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002309713.1 | 0 | 19 | 405 | 5 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331633.1 | 0 | 14 | 405 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 14 | 405 | 4 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529096.1 | 0 | 12 | 405 | 3 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 19 | 405 | 5 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-21 | 135 | 391 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-21 | 135 | 391 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-21 | 135 | 391 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-21 | 135 | 391 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-21 | 135 | 391 | 77 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |