| Basic Information | |
|---|---|
| Species | Malus domestica |
| Cazyme ID | MDP0000846748 |
| Family | GT41 |
| Protein Properties | Length: 917 Molecular Weight: 101405 Isoelectric Point: 5.4893 |
| Chromosome | Chromosome/Scaffold: 015711143 Start: 2344 End: 10702 |
| Description | Tetratricopeptide repeat (TPR)-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT41 | 363 | 853 | 0 |
| IKPNFSQSLNNLGVVYTVQGKMDAAANMIDKAIIANPTYAEAYNNLGVLYRDAGNITLAIGAYEECLKIDPDSRNAGQNRLLAMNYINEGLDDKLFVAHR DWGRRFMRLYPQYTSWDNPKDPERPLVIGYVSPDYFTHSVSYFIEAPLAHHEYTKYKVVVYSAVVKADAKTIRFREKVLKKGGIWRDIYGIDEKKVASII REDKVDILVELTGHTANNKLGTMACRPSPVQVTWIGYPNTTGLPAIDYRITDSLADPPDSKQKHVEELVRLPDCFLCYTPSPEAGPVMPTPALSNGFVTF GSFNNLAKITPKVLQVWARILSAIPNSRLVVKCKPFSCDSVRERFLSTLEQLGLEPLRVDLLPLILLNYDHMQAYSLMDISLDTFPYAGTTTTCESLYMG VPCVTMAGSVHAHNVGVSILSKVGLGNLIAKSEDEYVQLAVQLASDITALSNLRMGLRDLMARSPVCDGPKFTFGLESAYRSMWHSYCKGD | |||
| Full Sequence |
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| Protein Sequence Length: 917 Download |
| MAWTEKDVGN VRNGEPAGEN GFLDGSQPSP STSGSIVVGV PAGKVFEVKD ALSYANILRS 60 RNKFSDALSL YETLLEKDPG NVEAHIGKGI CLQMKNMGRL AFDSFAEAIR LDPQNACAXT 120 HCGILYKDEG RLREAAESYQ KALKADQSYK PAAECLAIVL TDLGTSLKLA GNTQEGLQKY 180 YEALKTDPHY APAYYNLGVV YSEMMQFDMA LTCYEKAALE RPMYAEAYCN MGVIYKNRGD 240 LESAIACYER CLAVSPNFEI AKNNMAIALT DLGTKVKLEG DIDQGISYYK KALYYNWHYA 300 DAMYNLGVAY GEMLKFDMAI VFYELAFHFN PHCAEACNNL GVIYKDRDNL DKAVECYQLA 360 LSIKPNFSQS LNNLGVVYTV QGKMDAAANM IDKAIIANPT YAEAYNNLGV LYRDAGNITL 420 AIGAYEECLK IDPDSRNAGQ NRLLAMNYIN EGLDDKLFVA HRDWGRRFMR LYPQYTSWDN 480 PKDPERPLVI GYVSPDYFTH SVSYFIEAPL AHHEYTKYKV VVYSAVVKAD AKTIRFREKV 540 LKKGGIWRDI YGIDEKKVAS IIREDKVDIL VELTGHTANN KLGTMACRPS PVQVTWIGYP 600 NTTGLPAIDY RITDSLADPP DSKQKHVEEL VRLPDCFLCY TPSPEAGPVM PTPALSNGFV 660 TFGSFNNLAK ITPKVLQVWA RILSAIPNSR LVVKCKPFSC DSVRERFLST LEQLGLEPLR 720 VDLLPLILLN YDHMQAYSLM DISLDTFPYA GTTTTCESLY MGVPCVTMAG SVHAHNVGVS 780 ILSKVGLGNL IAKSEDEYVQ LAVQLASDIT ALSNLRMGLR DLMARSPVCD GPKFTFGLES 840 AYRSMWHSYC KGDVPSQRQM EMLQEEVIAE DPAAGVSDPT SITTPRXGPP GSIKTNGFGP 900 LPQPVLNPST CEENGV* 960 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| TIGR02917 | PEP_TPR_lipo | 2.0e-17 | 52 | 430 | 379 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 4.0e-21 | 55 | 452 | 407 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 1.0e-21 | 41 | 434 | 396 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| TIGR02917 | PEP_TPR_lipo | 1.0e-23 | 52 | 434 | 411 | + putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. | ||
| COG3914 | Spy | 3.0e-82 | 317 | 849 | 562 | + Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAX46402.1 | 0 | 1 | 916 | 1 | 916 | putative SPINDLY protein [Rosa luciae] |
| RefSeq | XP_002281883.1 | 0 | 1 | 916 | 1 | 913 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002308458.1 | 0 | 1 | 914 | 1 | 920 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002323412.1 | 0 | 1 | 904 | 1 | 908 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002530535.1 | 0 | 1 | 914 | 1 | 914 | o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1w3b_B | 4e-38 | 89 | 409 | 41 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 6e-30 | 156 | 441 | 66 | 344 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 5e-27 | 56 | 375 | 75 | 380 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 1e-23 | 197 | 477 | 39 | 340 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| PDB | 1w3b_B | 0.00000000000005 | 67 | 272 | 188 | 386 | A Chain A, The Superhelical Tpr Domain Of O-linked Glcnac Transferase Reveals Structural Similarities To Importin Alpha. |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY295408 | 401 | 430 | 827 | 0 |
| GO867600 | 327 | 321 | 647 | 0 |
| GO867600 | 119 | 162 | 278 | 0.0000000000003 |
| GO867600 | 140 | 248 | 385 | 0.0000001 |
| GO867600 | 136 | 57 | 190 | 0.62 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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