Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000859246 |
Family | GH28 |
Protein Properties | Length: 400 Molecular Weight: 42195.7 Isoelectric Point: 8.0829 |
Chromosome | Chromosome/Scaffold: 011122263 Start: 2909 End: 4108 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 385 | 0 |
DACASPAPSKVVVPSGTYMLTEASFKGPCKAPIEIQVQGKLTAPADGGKLTRPDTWVGFDHVNKLTVSGGGXFDGQGALAWKKNDCNKNKDCKSIAINMR FNFVTNSTIQDITSLDSKNFHVNVLGCHNVTFQRVNVTAPGESINTDGIHIGRSTGINITDAHIGTGDDCVSIGDGNKEITVTRVTCGPGHGISVGSLGR YPNEEPVVGIRVKNCTLTNTSNGVRIKTWPASPSDGIASDMHFEDIIMVNVSNPVLIDQQYCPWNQCKQNVPSKVKISNVSFKNIKGSSATPLAVQIVCS GGIPCENVELADIDLTYNGNKGPLTSQCSNVKPT |
Full Sequence |
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Protein Sequence Length: 400 Download |
MARKLNILAA FLFLLSASKT QAEPGVFDVT SATYGAKPGS DITHALAKAW IDACASPAPS 60 KVVVPSGTYM LTEASFKGPC KAPIEIQVQG KLTAPADGGK LTRPDTWVGF DHVNKLTVSG 120 GGXFDGQGAL AWKKNDCNKN KDCKSIAINM RFNFVTNSTI QDITSLDSKN FHVNVLGCHN 180 VTFQRVNVTA PGESINTDGI HIGRSTGINI TDAHIGTGDD CVSIGDGNKE ITVTRVTCGP 240 GHGISVGSLG RYPNEEPVVG IRVKNCTLTN TSNGVRIKTW PASPSDGIAS DMHFEDIIMV 300 NVSNPVLIDQ QYCPWNQCKQ NVPSKVKISN VSFKNIKGSS ATPLAVQIVC SGGIPCENVE 360 LADIDLTYNG NKGPLTSQCS NVKPTITRVP NALACATSS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-69 | 40 | 383 | 349 | + polygalacturonase | ||
PLN02793 | PLN02793 | 2.0e-80 | 34 | 370 | 350 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-86 | 26 | 381 | 359 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-114 | 54 | 383 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 3.0e-127 | 27 | 383 | 359 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABE77145.1 | 0 | 5 | 399 | 8 | 405 | putative polygalacturonase [Fragaria x ananassa] |
DDBJ | BAA89476.1 | 0 | 5 | 395 | 3 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89477.1 | 0 | 16 | 395 | 21 | 393 | polygalacturonase [Salix gilgiana] |
DDBJ | BAA89478.1 | 0 | 16 | 395 | 21 | 393 | polygalacturonase [Salix gilgiana] |
RefSeq | XP_002329175.1 | 0 | 7 | 395 | 10 | 393 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 7e-18 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 7e-18 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 7e-18 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 7e-18 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 7e-18 | 53 | 382 | 17 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |