y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000902285 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42382.1 Isoelectric Point: 8.0939 |
Chromosome | Chromosome/Scaffold: 010557249 Start: 4326 End: 6602 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 83 | 380 | 0 |
GRLLAPNSPEAWKGLDQSQWLAFKRVSGLKVAGPGRINGRGKGWWDQSCRXHPGLKGCTVLAPTAVKFVSCNNSSISDVHFVNSSQVHVLIEGCEGIHIE NVLIEAPERSPNTDGIHISASHYVFVTNAIIATGDDCVSIGDHTSNIIVSYVKCGPGHGISIGSLGRSGNFVQVENIHVTQVYLQGTTSGARIKTWQAGK GYVRRVTFEHMFFRSVKNPIIIDQNYCSKRGACKELDTGVHISDVSFNNLYGTSSSQAAISLNCSRSVACTGVFLKSIYLRPAIQGQNLTSNCTNAHG |
Full Sequence |
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Protein Sequence Length: 395 Download |
MQGGYVYLFV LLLLLGSLVS AAIACSTEPA NLTTFDVRDF GAISAGGNID NSEAFLLAWN 60 ATCNSESEIS TLIVPRRKFL ILGRLLAPNS PEAWKGLDQS QWLAFKRVSG LKVAGPGRIN 120 GRGKGWWDQS CRXHPGLKGC TVLAPTAVKF VSCNNSSISD VHFVNSSQVH VLIEGCEGIH 180 IENVLIEAPE RSPNTDGIHI SASHYVFVTN AIIATGDDCV SIGDHTSNII VSYVKCGPGH 240 GISIGSLGRS GNFVQVENIH VTQVYLQGTT SGARIKTWQA GKGYVRRVTF EHMFFRSVKN 300 PIIIDQNYCS KRGACKELDT GVHISDVSFN NLYGTSSSQA AISLNCSRSV ACTGVFLKSI 360 YLRPAIQGQN LTSNCTNAHG IAFGVIQPEP CLQI* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 3.0e-78 | 33 | 389 | 377 | + polygalacturonase ADPG | ||
PLN03010 | PLN03010 | 3.0e-79 | 35 | 380 | 365 | + polygalacturonase | ||
PLN03003 | PLN03003 | 1.0e-82 | 35 | 394 | 382 | + Probable polygalacturonase At3g15720 | ||
PLN02188 | PLN02188 | 9.0e-86 | 30 | 391 | 380 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 2.0e-97 | 26 | 392 | 384 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD55472.1 | 0 | 40 | 392 | 3 | 381 | AC009322_12 Similar to polygalacturonases [Arabidopsis thaliana] |
DDBJ | BAC57279.1 | 0 | 35 | 391 | 53 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
GenBank | EEC81719.1 | 0 | 35 | 391 | 53 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
RefSeq | NP_178131.1 | 0 | 79 | 392 | 30 | 336 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002463688.1 | 0 | 33 | 392 | 60 | 433 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 9e-24 | 113 | 362 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 3e-17 | 118 | 377 | 83 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 3e-17 | 118 | 377 | 83 | 332 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 3e-17 | 118 | 377 | 83 | 332 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1nhc_F | 0.0000000000002 | 119 | 341 | 80 | 297 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |