Basic Information | |
---|---|
Species | Malus domestica |
Cazyme ID | MDP0000903805 |
Family | AA3 |
Protein Properties | Length: 561 Molecular Weight: 61125.4 Isoelectric Point: 8.7549 |
Chromosome | Chromosome/Scaffold: 012506282 Start: 5828 End: 8190 |
Description | Glucose-methanol-choline (GMC) oxidoreductase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA3 | 61 | 551 | 0 |
PLQEEYDYIVVGGGTAGCPLATTLSANYSVLLLERGNIPSAYPNVLLANGTFANFMQEDDGKTPAQRFTSEDGVANLRGRVLGRGSMINVALYSRADGEF YEKSGIKLDMNLVNNSYEWVENTVAFRPNLSHWQSVVKDAMVEAGVRPDNGLTVDHILGSKVTATLFDDRGKRHGAVEHLNKGHPKNLRVAILATVERII FSSKASGLSAKGIIYSDSNGRSHRALIRGKGEVILSAGALGSPQLLLLSGVXPKSYLSSLKIPVVHPQPYIGQXMRDNPRNYVTILPPFQIELSTTQVVG ISSDYYIETNSGLPYSTQIFSLFPSPTIPNTINSSFGQISVKSPGPFSYGSLKLQSSYDVKVAPNVKFNYFAQEADLSRCVSAVRKMGDLLKTNSLKPYK ARDLPGLDGFNLFGPPLPMNQSDDASLKTFCRDTVATFWHYHGGCVVGKVVDEDLRVMGIKALRVVDGSVFNLSPGTNPQATLMMLGRYVG |
Full Sequence |
---|
Protein Sequence Length: 561 Download |
MEKSTTAAIL LLLYIFGLCP QPGVPSFANP SDDLGKYSLK VPLVFQNFSY LKFVRNATDL 60 PLQEEYDYIV VGGGTAGCPL ATTLSANYSV LLLERGNIPS AYPNVLLANG TFANFMQEDD 120 GKTPAQRFTS EDGVANLRGR VLGRGSMINV ALYSRADGEF YEKSGIKLDM NLVNNSYEWV 180 ENTVAFRPNL SHWQSVVKDA MVEAGVRPDN GLTVDHILGS KVTATLFDDR GKRHGAVEHL 240 NKGHPKNLRV AILATVERII FSSKASGLSA KGIIYSDSNG RSHRALIRGK GEVILSAGAL 300 GSPQLLLLSG VXPKSYLSSL KIPVVHPQPY IGQXMRDNPR NYVTILPPFQ IELSTTQVVG 360 ISSDYYIETN SGLPYSTQIF SLFPSPTIPN TINSSFGQIS VKSPGPFSYG SLKLQSSYDV 420 KVAPNVKFNY FAQEADLSRC VSAVRKMGDL LKTNSLKPYK ARDLPGLDGF NLFGPPLPMN 480 QSDDASLKTF CRDTVATFWH YHGGCVVGKV VDEDLRVMGI KALRVVDGSV FNLSPGTNPQ 540 ATLMMLGRYV GVQMLEERSE * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PRK02106 | PRK02106 | 5.0e-10 | 63 | 155 | 107 | + choline dehydrogenase; Validated | ||
TIGR01810 | betA | 7.0e-34 | 67 | 547 | 547 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. | ||
PRK02106 | PRK02106 | 6.0e-34 | 246 | 547 | 340 | + choline dehydrogenase; Validated | ||
COG2303 | BetA | 2.0e-45 | 64 | 558 | 560 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] | ||
PLN02785 | PLN02785 | 8.0e-159 | 37 | 558 | 567 | + Protein HOTHEAD |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC61982.1 | 0 | 1 | 559 | 1 | 546 | (R)-(+)-mandelonitrile lyase isoform MDL5 precursor [Prunus serotina] |
GenBank | AAL11514.1 | 0 | 1 | 559 | 1 | 545 | AF412329_1 R-oxynitrile lyase isoenzyme 1 precursor [Prunus dulcis] |
GenBank | ACY69987.1 | 0 | 21 | 559 | 16 | 537 | mandelonitrile lyase 1 [Eriobotrya japonica] |
GenBank | ACY69988.1 | 0 | 21 | 550 | 16 | 528 | mandelonitrile lyase 2 [Eriobotrya japonica] |
Swiss-Prot | P52707 | 0 | 1 | 559 | 1 | 546 | MDL3_PRUSE RecName: Full=(R)-mandelonitrile lyase 3; AltName: Full=Hydroxynitrile lyase 3; Short=(R)-oxynitrilase 3; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3red_L | 0 | 46 | 559 | 7 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_K | 0 | 46 | 559 | 7 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_J | 0 | 46 | 559 | 7 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_I | 0 | 46 | 559 | 7 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |
PDB | 3red_H | 0 | 46 | 559 | 7 | 519 | A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase Isozyme-1 |