Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000904158 |
Family | GH18 |
Protein Properties | Length: 304 Molecular Weight: 33296.4 Isoelectric Point: 4.5464 |
Chromosome | Chromosome/Scaffold: 017546243 Start: 8651 End: 9562 |
Description | |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH18 | 47 | 231 | 1.5e-23 |
SDVPINPNVELHFILSFAIDYDPSGSSPTNGKFNVFWDSDNLSPSQVSSIKNQHSNVKVALSLGGDSVGSGSAYFNPSSIDSWVSNAVSSLTSIIQQYNL DGIDIDYEHFQADPDTFSECIGXLITTLKNNGVISFASIAPFDDDQVQSHYLALWKSYGHLIDYVNFQFYAYDQGTTVSQFINYF |
Full Sequence |
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Protein Sequence Length: 304 Download |
MAVPKLKLVI ALFFLQXLLT SHTQAGPANS DLFREYIGAE FNNVKFSDVP INPNVELHFI 60 LSFAIDYDPS GSSPTNGKFN VFWDSDNLSP SQVSSIKNQH SNVKVALSLG GDSVGSGSAY 120 FNPSSIDSWV SNAVSSLTSI IQQYNLDGID IDYEHFQADP DTFSECIGXL ITTLKNNGVI 180 SFASIAPFDD DQVQSHYLAL WKSYGHLIDY VNFQFYAYDQ GTTVSQFINY FNTQSSNYNG 240 GQVLASFISD GSGGLSPENG FFKACHRLKS EGKLGGIFVW SADDSMKLGF RYEKQSQALL 300 ANN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd02871 | GH18_chitinase_D-like | 8.0e-6 | 129 | 222 | 118 | + GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus. | ||
cd02874 | GH18_CFLE_spore_hydrolase | 4.0e-6 | 131 | 222 | 95 | + Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis. | ||
cd00598 | GH18_chitinase-like | 3.0e-9 | 42 | 216 | 182 | + The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are included in this alignment model. | ||
pfam00704 | Glyco_hydro_18 | 3.0e-9 | 58 | 218 | 169 | + Glycosyl hydrolases family 18. | ||
cd06544 | GH18_narbonin | 2.0e-122 | 32 | 285 | 255 | + Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN76732.1 | 0 | 9 | 287 | 7 | 284 | hypothetical protein [Vitis vinifera] |
EMBL | CAN76732.1 | 0 | 18 | 301 | 301 | 585 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002281665.1 | 0 | 7 | 301 | 5 | 301 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318148.1 | 0 | 8 | 301 | 2 | 298 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532811.1 | 0 | 7 | 301 | 5 | 302 | Chitinase 1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3sim_B | 0 | 32 | 300 | 2 | 273 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
PDB | 3sim_A | 0 | 32 | 300 | 2 | 273 | A Chain A, Crystallographic Structure Analysis Of Family 18 Chitinase From Crocus Vernus |
PDB | 1nar_A | 1e-37 | 32 | 286 | 4 | 267 | A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution |
PDB | 2gsj_A | 0.0008 | 99 | 290 | 68 | 263 | A Chain A, Cdna Cloning And 1.75a Crystal Structure Determination Of Ppl2, A Novel Chimerolectin From Parkia Platycephala Seeds Exhibiting Endochitinolytic Activity |
PDB | 3qok_A | 0.001 | 92 | 233 | 97 | 236 | A Chain A, Crystal Structure Of Putative Chitinase Ii From Klebsiella Pneumoniae |