Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000910440 |
Family | PL4 |
Protein Properties | Length: 209 Molecular Weight: 24107.1 Isoelectric Point: 6.2838 |
Chromosome | Chromosome/Scaffold: 020107214 Start: 115 End: 1739 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 11 | 199 | 2.3e-38 |
VVMDNGILQVTLSNPDGIVTRIQYSGIDNLLEVLNEEVNRGYWDLVWSEAGSVGTTGTFDVIKGTKFKVXXXXXXQVEISFTRKWNPSQEGKLVPLNIDK RFIMLRNSSGFYSYAIYEHLKEWPPFNLPQTRITFKLRKEKFHYMAIADNRQRYMPLPDDRSPERSQALAYPEAVLLVDPIEPEFKGEV |
Full Sequence |
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Protein Sequence Length: 209 Download |
MSIFWHYQIV VVMDNGILQV TLSNPDGIVT RIQYSGIDNL LEVLNEEVNR GYWDLVWSEA 60 GSVGTTGTFD VIKGTKFKVX XXXXXQVEIS FTRKWNPSQE GKLVPLNIDK RFIMLRNSSG 120 FYSYAIYEHL KEWPPFNLPQ TRITFKLRKE KFHYMAIADN RQRYMPLPDD RSPERSQALA 180 YPEAVLLVDP IEPEFKGEVN LSSSIKEV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10320 | RGL4_N | 3.0e-33 | 11 | 193 | 186 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 4.0e-102 | 11 | 199 | 189 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 13 | 200 | 1 | 185 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 13 | 200 | 1 | 185 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 11 | 200 | 15 | 204 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 11 | 200 | 15 | 204 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 11 | 200 | 15 | 204 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC885808 | 189 | 11 | 199 | 0 |
CO105666 | 197 | 4 | 200 | 0 |
DW479599 | 190 | 11 | 200 | 0 |
DY302386 | 189 | 11 | 199 | 0 |
DW479600 | 190 | 11 | 200 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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