Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000911278 |
Family | GH28 |
Protein Properties | Length: 472 Molecular Weight: 50365.1 Isoelectric Point: 6.3003 |
Chromosome | Chromosome/Scaffold: 001042155 Start: 8408 End: 10640 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 104 | 427 | 0 |
AAACKVQASTMSVPSGSVFLVKPISFSGPNCEANIVFQLDGKIIAPTSSGDWGSGLLQWIEFTKLKGISIKGSGVIDGQGSVWWNDSPKYNPAKESTYSS LDDLALRFYGSDGVSVTGITLQNSPQAHLKFDDCTNVQVSDISISSPGNSPNTDGIHLQNSQNAVISATSIACGDDCISIQTGCSNVNIHNVNCGPGHGV SIGGLGKDNTKACVSNVTVRDVQMHNTLTGVRIKTWQGGSGSVQNIMFSNIQLTEVETPIMIDQFYCDKSKCQNQSSAVAVSGVNYVNIQGTYTSKPVHF ACSDSSPCTGVSLDTIELKSVDEG |
Full Sequence |
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Protein Sequence Length: 472 Download |
MRTFNLKTLS FFVLIAFFIS FSSFLEPCYA RKGGNKQHWR KXQKGYGGDH RRSAREDSYI 60 TPEETAVTLG ENSGGVSNVF NVLDYGAKGD GKADDTKAFE AAWAAACKVQ ASTMSVPSGS 120 VFLVKPISFS GPNCEANIVF QLDGKIIAPT SSGDWGSGLL QWIEFTKLKG ISIKGSGVID 180 GQGSVWWNDS PKYNPAKEST YSSLDDLALR FYGSDGVSVT GITLQNSPQA HLKFDDCTNV 240 QVSDISISSP GNSPNTDGIH LQNSQNAVIS ATSIACGDDC ISIQTGCSNV NIHNVNCGPG 300 HGVSIGGLGK DNTKACVSNV TVRDVQMHNT LTGVRIKTWQ GGSGSVQNIM FSNIQLTEVE 360 TPIMIDQFYC DKSKCQNQSS AVAVSGVNYV NIQGTYTSKP VHFACSDSSP CTGVSLDTIE 420 LKSVDEGKQL YDPFCWEAYG VLKTSTVPQI DCLKKGKPST ITQSGSSDSS C* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-76 | 112 | 428 | 320 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-76 | 116 | 454 | 345 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-83 | 111 | 421 | 313 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 7.0e-86 | 111 | 422 | 315 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 9.0e-90 | 116 | 448 | 336 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD46483.1 | 0 | 1 | 459 | 1 | 431 | polygalacturonase PG1 [Glycine max] |
GenBank | AAD46484.1 | 0 | 4 | 459 | 3 | 427 | polygalacturonase PG2 [Glycine max] |
GenBank | ACU24545.1 | 0 | 1 | 459 | 1 | 431 | unknown [Glycine max] |
DDBJ | BAH56488.1 | 0 | 1 | 469 | 2 | 509 | polygalacturonase 1 [Prunus persica] |
RefSeq | XP_002521450.1 | 0 | 22 | 457 | 22 | 457 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rmg_A | 7e-25 | 75 | 440 | 16 | 355 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1bhe_A | 7e-23 | 110 | 372 | 40 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 9e-22 | 171 | 409 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 9e-22 | 171 | 409 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 9e-22 | 171 | 409 | 72 | 307 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |