y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000939625 |
Family | GH28 |
Protein Properties | Length: 140 Molecular Weight: 15206.1 Isoelectric Point: 5.0689 |
Chromosome | Chromosome/Scaffold: 001765343 Start: 2481 End: 3454 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 118 | 6.1e-22 |
RAPTALMFQGCKEVYMDHFNVVNTPQTHILVWGSEGVYFSFIKTDSPGTSPNTDGIHIQDSQHVEIHGAELKS |
Full Sequence |
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Protein Sequence Length: 140 Download |
MVAVDGSSVG HRRLRVQVQN CNDDDADSGI PFVDGIPGND AGCIGRAPTA LMFQGCKEVY 60 MDHFNVVNTP QTHILVWGSE GVYFSFIKTD SPGTSPNTDG IHIQDSQHVE IHGAELKSGR 120 LFISRIFEYF GTVVYFGLI* 180 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 7.0e-7 | 50 | 119 | 70 | + polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-7 | 45 | 119 | 75 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 6.0e-10 | 18 | 124 | 116 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 9.0e-11 | 47 | 119 | 73 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-14 | 47 | 124 | 78 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO24262.1 | 0.00000000007 | 48 | 124 | 218 | 294 | putative style polygalacturonase [Turnera subulata] |
GenBank | ABD62081.1 | 0.00000000007 | 48 | 124 | 218 | 294 | putative style polygalacturonase [Turnera subulata] |
RefSeq | XP_002329026.1 | 7e-16 | 40 | 124 | 70 | 154 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002466241.1 | 0.00000000006 | 47 | 124 | 184 | 261 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
RefSeq | XP_002466242.1 | 0.00000000005 | 47 | 119 | 198 | 270 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |