y
Basic Information | |
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Species | Malus domestica |
Cazyme ID | MDP0000943790 |
Family | GH28 |
Protein Properties | Length: 522 Molecular Weight: 56199.6 Isoelectric Point: 8.484 |
Chromosome | Chromosome/Scaffold: 006260459 Start: 28702 End: 32544 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 130 | 475 | 0 |
AAACKVEASNIIVPAGYQFLVGPISFSGPYCQKNILFQLDGTIVAPTDSESWGKGLFQWLEFTKLNGITVQGKGVIDGRGSSWWQDTPYGDPIDDDFKLI VPLNSSVQQRPPMPIRSQLSGKMPSIKPTALRFYGSFNVTVTGITIQNSPQCHLKFDNCQGVLVHDMSVSSPGDSPNTDGIHLQNSQRVLIHTTTLACGD DCISIQTGCTDVYVHNVNCGPGHGISIGSLGRDNTKACVSNITVRDIIMHNTMNGVRVKTWQGGSGSVQGVMFSNIQVSEVQLPIVIDQFYCDKSTCKNQ TSAVALSGITYERIRGTYTVKPVHFACSDSLPCVGVTLNGIDLKPL |
Full Sequence |
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Protein Sequence Length: 522 Download |
MSAFSFRSIA FMLVLAFLVW SSNFDACMGR RGRHWRQNRA SSASLSKKKG KSSHGGGGGS 60 HHHSGSGSKP KRAPSPPQNK APSPPQVPKP IDDTPPSSPQ KGSSTFNVLD FGAKGDGSTD 120 DTKAFQAAWA AACKVEASNI IVPAGYQFLV GPISFSGPYC QKNILFQLDG TIVAPTDSES 180 WGKGLFQWLE FTKLNGITVQ GKGVIDGRGS SWWQDTPYGD PIDDDFKLIV PLNSSVQQRP 240 PMPIRSQLSG KMPSIKPTAL RFYGSFNVTV TGITIQNSPQ CHLKFDNCQG VLVHDMSVSS 300 PGDSPNTDGI HLQNSQRVLI HTTTLACGDD CISIQTGCTD VYVHNVNCGP GHGISIGSLG 360 RDNTKACVSN ITVRDIIMHN TMNGVRVKTW QGGSGSVQGV MFSNIQVSEV QLPIVIDQFY 420 CDKSTCKNQT SAVALSGITY ERIRGTYTVK PVHFACSDSL PCVGVTLNGI DLKPLQEKYH 480 LYDPFCWQTF GELRTPTVPP IGCLQLGKPS SNKVNSDHDV C* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-76 | 106 | 472 | 372 | + polygalacturonase | ||
PLN02188 | PLN02188 | 7.0e-78 | 102 | 473 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 8.0e-87 | 104 | 473 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 4.0e-87 | 137 | 472 | 337 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 1.0e-102 | 95 | 500 | 411 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABK95830.1 | 0 | 1 | 521 | 4 | 516 | unknown [Populus trichocarpa] |
RefSeq | NP_564758.2 | 0 | 2 | 521 | 5 | 539 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266600.1 | 0 | 1 | 521 | 1 | 505 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311773.1 | 0 | 1 | 521 | 4 | 517 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002525361.1 | 0 | 1 | 521 | 1 | 519 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-23 | 98 | 424 | 20 | 366 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-23 | 98 | 424 | 20 | 366 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-23 | 98 | 424 | 20 | 366 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1e-23 | 98 | 424 | 20 | 366 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-21 | 251 | 423 | 145 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |