Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g012390.1 |
Family | GH28 |
Protein Properties | Length: 398 Molecular Weight: 42683 Isoelectric Point: 6.61 |
Chromosome | Chromosome/Scaffold: 1 Start: 2890367 End: 2893700 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 55 | 383 | 0 |
CAANQGTPTLVVPAEHTFFVRQATFQGPCKSQNLHIQIMGNIIAPHRDAWGSCSKRWLYFLNVHGMTVDGSGVIDGRGEAWWSNLNGTKGCAANARPTAL LFERCDGLQLSGLTHINGPAMHVYVVHSQDVTISHINISSSKDSYNTDGIDISNSIRVNIHDSIIQSGDDCIAIKGGSQFINVTQVTCGPGTHGISVGSL GGGGAEEFADRVNVRNCTFNGADSAARIKTWPGGKGYAKAIIFDHIIVNQIRNPISIQQHYMRGGEQKDAVKVSDVTFSNIYGTCSGDDAIFLDCANIGC DNITLEQINITSVDPKKPNSAICNNVQGK |
Full Sequence |
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Protein Sequence Length: 398 Download |
MQDLFISGLL IFSIVSCNSF VGFSQNTFNV LQYGAKGDGT SDDTQAFLEA WKALCAANQG 60 TPTLVVPAEH TFFVRQATFQ GPCKSQNLHI QIMGNIIAPH RDAWGSCSKR WLYFLNVHGM 120 TVDGSGVIDG RGEAWWSNLN GTKGCAANAR PTALLFERCD GLQLSGLTHI NGPAMHVYVV 180 HSQDVTISHI NISSSKDSYN TDGIDISNSI RVNIHDSIIQ SGDDCIAIKG GSQFINVTQV 240 TCGPGTHGIS VGSLGGGGAE EFADRVNVRN CTFNGADSAA RIKTWPGGKG YAKAIIFDHI 300 IVNQIRNPIS IQQHYMRGGE QKDAVKVSDV TFSNIYGTCS GDDAIFLDCA NIGCDNITLE 360 QINITSVDPK KPNSAICNNV QGKANNIISP PFHCLHQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 4.0e-67 | 59 | 380 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-71 | 24 | 390 | 376 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-81 | 24 | 391 | 378 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-83 | 24 | 395 | 381 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 8.0e-87 | 28 | 386 | 366 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 27 | 395 | 29 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 395 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CBI36306.1 | 0 | 1 | 397 | 94 | 495 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002324855.1 | 0 | 1 | 395 | 1 | 394 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 1 | 395 | 1 | 392 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 1e-21 | 120 | 365 | 97 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 1e-21 | 120 | 365 | 97 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1nhc_F | 4e-18 | 127 | 385 | 79 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 127 | 385 | 79 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 127 | 385 | 79 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |