y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g013730.1 |
Family | GH28 |
Protein Properties | Length: 395 Molecular Weight: 42474.3 Isoelectric Point: 7.211 |
Chromosome | Chromosome/Scaffold: 1 Start: 3498528 End: 3501330 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 51 | 380 | 0 |
KALCGGRYGNTLVVPNGHSFFVRPTLNFSGPCYSKNINIKIMGNILAPKRSDWGRECSLMWLHFFNISGLTLDGSGVINGNGEGWESREKGIGGCPRIPT ALQFDKCDGLQINGLTHINGPGAHIAVIDSQDITISHIHINSPKKSHNTDGIDLTRTIGVNIHDIQIESGDDCIAVKGGSQFVNVSNVTCGPGHGISVGS LGGHGSEEFVQHFSVKNCTFNGADSAVKIKTWPGGKGYAKHIIFEDIIINQTNYPVFIDQHYMRTPEQHQAVKISNITFSNIYGTCIGEDAVVLDCAKIG CYNITLNQINITSINRKKPASVKCKNVHGT |
Full Sequence |
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Protein Sequence Length: 395 Download |
MDLLIVCILI LSIASCNSWV VNGEDTLNVI HYGAKGDGRT DDSKAFVDAF KALCGGRYGN 60 TLVVPNGHSF FVRPTLNFSG PCYSKNINIK IMGNILAPKR SDWGRECSLM WLHFFNISGL 120 TLDGSGVING NGEGWESREK GIGGCPRIPT ALQFDKCDGL QINGLTHING PGAHIAVIDS 180 QDITISHIHI NSPKKSHNTD GIDLTRTIGV NIHDIQIESG DDCIAVKGGS QFVNVSNVTC 240 GPGHGISVGS LGGHGSEEFV QHFSVKNCTF NGADSAVKIK TWPGGKGYAK HIIFEDIIIN 300 QTNYPVFIDQ HYMRTPEQHQ AVKISNITFS NIYGTCIGED AVVLDCAKIG CYNITLNQIN 360 ITSINRKKPA SVKCKNVHGT ANDIIAPHGL CVTN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 9.0e-73 | 10 | 387 | 388 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-76 | 54 | 381 | 333 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-83 | 24 | 387 | 373 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-83 | 25 | 381 | 366 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 3.0e-94 | 20 | 383 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 394 | 1 | 398 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 3 | 380 | 4 | 383 | Glycoside hydrolase, family 28 [Medicago truncatula] |
RefSeq | NP_195292.2 | 0 | 28 | 383 | 25 | 380 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 1 | 393 | 1 | 395 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515526.1 | 0 | 3 | 393 | 8 | 393 | Polygalacturonase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1czf_B | 3e-18 | 127 | 382 | 106 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 3e-18 | 127 | 382 | 106 | 361 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 7e-18 | 118 | 377 | 72 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 7e-18 | 118 | 377 | 72 | 333 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ia5_A | 7e-18 | 118 | 377 | 72 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |