Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g039640.1 |
Family | CE8 |
Protein Properties | Length: 232 Molecular Weight: 26252.3 Isoelectric Point: 5.6704 |
Chromosome | Chromosome/Scaffold: 1 Start: 10731630 End: 10735813 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 70 | 220 | 0 |
FYGYQDTLYDANGRHYYKLCTIQGAVDFIFGAGQSLFELLGGGFITAQGRESPNDTNGFVFKDCHIFGNANTYLGRPWRPYARVLFYKTNMTKIVEPSGW DSWSPDGREDLSTYAEYGNFGPGADTSKRVSWAKKLDLSTVENMANLNFIN |
Full Sequence |
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Protein Sequence Length: 232 Download |
MDRIFVMDNS FMENNSGMSH VFGPRPTHKP PDLFLNLDDK AQVNPSTMLE SNSYNNPING 60 NRKLRAVLLF YGYQDTLYDA NGRHYYKLCT IQGAVDFIFG AGQSLFELLG GGFITAQGRE 120 SPNDTNGFVF KDCHIFGNAN TYLGRPWRPY ARVLFYKTNM TKIVEPSGWD SWSPDGREDL 180 STYAEYGNFG PGADTSKRVS WAKKLDLSTV ENMANLNFIN TPEEWINYQP F* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01095 | Pectinesterase | 1.0e-45 | 70 | 202 | 152 | + Pectinesterase. | ||
PLN02665 | PLN02665 | 1.0e-46 | 70 | 220 | 160 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-50 | 70 | 205 | 148 | + putative pectinesterase | ||
PLN02176 | PLN02176 | 5.0e-58 | 70 | 230 | 174 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-84 | 52 | 230 | 206 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI40838.1 | 0 | 52 | 230 | 137 | 341 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_197400.1 | 0 | 34 | 220 | 105 | 318 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002263748.1 | 0 | 52 | 230 | 124 | 328 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002323773.1 | 0 | 34 | 231 | 77 | 289 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002518106.1 | 0 | 34 | 231 | 124 | 336 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xg2_A | 6e-24 | 72 | 201 | 129 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1gq8_A | 2e-23 | 72 | 201 | 133 | 281 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_B | 0.0000000004 | 59 | 197 | 138 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntq_A | 0.0000000004 | 59 | 197 | 138 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 2ntp_B | 0.0000000004 | 59 | 197 | 138 | 315 | A Chain A, Pectin Methylesterase From Carrot |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG236231 | 172 | 70 | 232 | 0 |
JG248256 | 172 | 70 | 232 | 0 |
JG242803 | 165 | 77 | 232 | 0 |
BE434583 | 173 | 70 | 231 | 0 |
JG233861 | 161 | 81 | 232 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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