| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr1g061560.1 |
| Family | GT30 |
| Protein Properties | Length: 511 Molecular Weight: 57714.6 Isoelectric Point: 10.2501 |
| Chromosome | Chromosome/Scaffold: 1 Start: 15686480 End: 15691787 |
| Description | KDO transferase A |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT30 | 38 | 219 | 0 |
| QRWPERLGHASQPRKPGPLVWFHAVSLGEGMIAIPVIKHCIRKMPNLNVLVTITTLSAFEVLSKKIPSEVILQFSPVDTPSSIRSFLHYWKPSAIVLMES ELWPNLIMDASKNGITLALLNARISEKSFKLWSGPVLLPLISLMLSKFSLIVPLSTEQGIRFQLLQAPPYIINFSGDLKYVI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 511 Download |
| MNPGLAAYKL YRALTYAASP LIRLHLQWRR FRGLEHLQRW PERLGHASQP RKPGPLVWFH 60 AVSLGEGMIA IPVIKHCIRK MPNLNVLVTI TTLSAFEVLS KKIPSEVILQ FSPVDTPSSI 120 RSFLHYWKPS AIVLMESELW PNLIMDASKN GITLALLNAR ISEKSFKLWS GPVLLPLISL 180 MLSKFSLIVP LSTEQGIRFQ LLQAPPYIIN FSGDLKYVIE DFGVNECGRM NIDNLRQQLS 240 HKQVWMASSI HRGEEEIISG VHNVLMQLRP NIMTIIVPRH PQQGREIAKK LERQGHYVVL 300 RSQHERFKPE TNIYVVDTLG ELRQMYTLTP IAVIGGSFLP GLSGHNISEA AAAGCAILTG 360 RHVGHFSHMV LEMQQLNPLS VLQVSGKLEL EKSLTELFTN TTLLEARRRA AKEAFCMLSS 420 DIVANIWSLL NFHIFTRLFA EMKCHMPHFL FHSKLAFKGW FSKRVDAYQL VSELIVVGLE 480 RASYGRTDWK GRVKQQSIAA GNQLSGTGLW * |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam04413 | Glycos_transf_N | 3.0e-55 | 38 | 220 | 185 | + 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase). Members of this family transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Members of the family transfer UDP, ADP, GDP or CMP linked sugars. The Glycos_transf_N region is flanked at the N-terminus by a signal peptide and at the C-terminus by Glycos_transf_1 (pfam00534). The eukaryotic glycogen synthases may be distant members of this bacterial family. |
| COG1519 | KdtA | 6.0e-104 | 10 | 367 | 360 | + 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] |
| PRK05749 | PRK05749 | 3.0e-108 | 10 | 367 | 360 | + 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016740 | transferase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABE80128.2 | 0 | 1 | 510 | 1 | 470 | Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal [Medicago truncatula] |
| RefSeq | NP_195997.2 | 0 | 1 | 435 | 1 | 436 | 3-deoxy-D-manno-octulosonic acid transferase-related [Arabidopsis thaliana] |
| RefSeq | XP_002277784.1 | 0 | 8 | 435 | 10 | 436 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002322900.1 | 0 | 4 | 437 | 8 | 440 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002528642.1 | 0 | 2 | 435 | 8 | 440 | 3-deoxy-d-manno-octulosonic-acid transferase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2xcu_D | 5e-23 | 57 | 420 | 43 | 366 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2xcu_C | 5e-23 | 57 | 420 | 43 | 366 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2xcu_B | 5e-23 | 57 | 420 | 43 | 366 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2xcu_A | 5e-23 | 57 | 420 | 43 | 366 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
| PDB | 2xci_D | 5e-23 | 57 | 420 | 43 | 366 | A Chain A, Membrane-Embedded Monofunctional Glycosyltransferase Waaa Of Aquifex Aeolicus, Substrate-Free Form |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| DY266328 | 359 | 8 | 366 | 0 |
| BG645073 | 254 | 1 | 248 | 0 |
| DY279419 | 351 | 27 | 377 | 0 |
| FC917851 | 312 | 27 | 338 | 0 |
| DY279419 | 47 | 338 | 384 | 0.21 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |