| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr1g082890.1 |
| Family | GH2 |
| Protein Properties | Length: 998 Molecular Weight: 113028 Isoelectric Point: 6.6965 |
| Chromosome | Chromosome/Scaffold: 1 Start: 21398487 End: 21404344 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 40 | 789 | 0 |
| LPWMEAQVPGTVLATLVKNKVVPDPFYGLGNEAILDIADAGRDYYTFWFFSTFQCKLSKNQHCDLNFRGINYSANVYLNGHEMVLPKGMFRRHSLDVTNI LHPDGNNLLAVLVHPPDHPGSIPPQGGQGGDHEIGKDVATQYVQGWDWMAPIRGREGKAWEKRNEQVEEIEENERGGDRNTGIWDEVSIFISGPVKIIDP HLVSSFFDNYKRVYLHATTELENRSSWTAECSLSIHVTTELEGSIHLVEQLQTQNISVPAKSRVQYTFPEVSGYIYSLFFYKPDLWWPNGMGKQSLYNVV IDIAVKGFGESDSWSHYFGFRKIESHIDDATGGRLFKVNGEPIFIRGGNWILSDGLLRLSKKRYSTDIKFHADMNFNMIRCWGGGLAERPEFYHYCDYYG LLVWQEFWITGDIDGRGDPVSNPQGPLDHDLFLFCARDTIKLLRNHPSLALWVGGNEQTPPHDINDALKNDLKLHPYFEHVKNKGKPVGGLSPKLGDPSQ YLDGTRIYIEGSLWSGFADGKGGFTDGPYEIQNPEDFFKDSFYKHGFNPEVGSVGIPVAATIRATMPSEGWQIPLFKKDSNGYVEEVPNPIWKYHKYIPY SKPTKVHDQLQLYGAVKDLDDFCLKAQLANFIQYRALLEGWTSRMWSKYTGVLIWKTQNPWTGLRGQFYDHLHDQTAGFYGCRIAAEPIHVQLNLDTYFI EVINTTSEELSNVAVEVSVWDLEGTSPYYKTHENISFLPKKVTPIAEMKY | |||
| Full Sequence |
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| Protein Sequence Length: 998 Download |
| MTTSQGKTVL DSGWFAARLN DVHITGTQLT TTNPPSGPTL PWMEAQVPGT VLATLVKNKV 60 VPDPFYGLGN EAILDIADAG RDYYTFWFFS TFQCKLSKNQ HCDLNFRGIN YSANVYLNGH 120 EMVLPKGMFR RHSLDVTNIL HPDGNNLLAV LVHPPDHPGS IPPQGGQGGD HEIGKDVATQ 180 YVQGWDWMAP IRGREGKAWE KRNEQVEEIE ENERGGDRNT GIWDEVSIFI SGPVKIIDPH 240 LVSSFFDNYK RVYLHATTEL ENRSSWTAEC SLSIHVTTEL EGSIHLVEQL QTQNISVPAK 300 SRVQYTFPEV SGYIYSLFFY KPDLWWPNGM GKQSLYNVVI DIAVKGFGES DSWSHYFGFR 360 KIESHIDDAT GGRLFKVNGE PIFIRGGNWI LSDGLLRLSK KRYSTDIKFH ADMNFNMIRC 420 WGGGLAERPE FYHYCDYYGL LVWQEFWITG DIDGRGDPVS NPQGPLDHDL FLFCARDTIK 480 LLRNHPSLAL WVGGNEQTPP HDINDALKND LKLHPYFEHV KNKGKPVGGL SPKLGDPSQY 540 LDGTRIYIEG SLWSGFADGK GGFTDGPYEI QNPEDFFKDS FYKHGFNPEV GSVGIPVAAT 600 IRATMPSEGW QIPLFKKDSN GYVEEVPNPI WKYHKYIPYS KPTKVHDQLQ LYGAVKDLDD 660 FCLKAQLANF IQYRALLEGW TSRMWSKYTG VLIWKTQNPW TGLRGQFYDH LHDQTAGFYG 720 CRIAAEPIHV QLNLDTYFIE VINTTSEELS NVAVEVSVWD LEGTSPYYKT HENISFLPKK 780 VTPIAEMKYP KSKNPKPVYF LLLKLYNKSD NRILSRNFYW LHLPGGDYKL LEPYRKKKIP 840 LKITSEVFIE GSTYKLQMHV HNTSKIPDSK SLTSECGSNS PETVHNGAGK EQDVGWFKKI 900 HKHFAGKSDD GLKVSEINGH DIGVAFFLHF SVHASSRDHK EGEDTRILPV HYSDNYFSLV 960 PGETTTIKIS FEAPQGVAPR VTLNGWNYHG QTIHEAL* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02837 | Glyco_hydro_2_N | 9.0e-5 | 85 | 153 | 70 | + Glycosyl hydrolases family 2, sugar binding domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities and has a jelly-roll fold. | ||
| PRK09525 | lacZ | 5.0e-5 | 358 | 496 | 154 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 3.0e-7 | 98 | 496 | 418 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| pfam00703 | Glyco_hydro_2 | 2.0e-9 | 234 | 360 | 127 | + Glycosyl hydrolases family 2. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 2.0e-28 | 44 | 496 | 456 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN82620.1 | 0 | 6 | 989 | 5 | 967 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI36793.1 | 0 | 6 | 989 | 5 | 945 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002284576.1 | 0 | 6 | 989 | 5 | 967 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002319539.1 | 0 | 6 | 989 | 5 | 967 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002512381.1 | 0 | 6 | 990 | 5 | 968 | beta-mannosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2vzo_B | 0 | 35 | 821 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_B | 0.002 | 947 | 993 | 848 | 896 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0 | 35 | 821 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2vzo_A | 0.002 | 947 | 993 | 848 | 896 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| PDB | 2x09_B | 0 | 35 | 821 | 74 | 767 | A Chain A, Crystal Structure Of Amycolatopsis Orientalis Exo- Chitosanase Csxa |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES793920 | 381 | 405 | 780 | 0 |
| GO871600 | 336 | 332 | 664 | 0 |
| ES832790 | 306 | 529 | 834 | 0 |
| GO847639 | 326 | 549 | 874 | 0 |
| DY915623 | 301 | 547 | 847 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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