Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr1g085310.1 |
Family | GH5 |
Protein Properties | Length: 403 Molecular Weight: 45085.8 Isoelectric Point: 8.3202 |
Chromosome | Chromosome/Scaffold: 1 Start: 22542792 End: 22544944 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH5 | 40 | 369 | 3.5e-34 |
NGKTHYVNGFNSYWLTTMASDPSTSSKVTSTFQQASQHGLNVGRTWAFNDGGYKALQISPGSYDENVFKALDFVISEASKYGVKLILSLVNNWNDFGGKN KYVQWAKERGQNIKNDDDFFTHPVVKQYYKNHVKAVLTRKNTISGVLYKDDPTIFAWELMNEPRYVNDSGKSIQNWVSEMAPYVKSIDSNHMLEIGLEGF YSETMLQKKQFNPNTAQVGTDFISNNQIPQIDFATIHIYPDQWIQGSEETTQNVFVDKWIGAHIQDSNTVLGKPIIIAEFGKSSKSAGYSIDKRDSYFKK VYNAISTSAISGGSCAGGIFWQLLSQGMDN |
Full Sequence |
---|
Protein Sequence Length: 403 Download |
MGFQILVLTY FLVALAVIQH VGANIDAGFV QRKGTHFILN GKTHYVNGFN SYWLTTMASD 60 PSTSSKVTST FQQASQHGLN VGRTWAFNDG GYKALQISPG SYDENVFKAL DFVISEASKY 120 GVKLILSLVN NWNDFGGKNK YVQWAKERGQ NIKNDDDFFT HPVVKQYYKN HVKAVLTRKN 180 TISGVLYKDD PTIFAWELMN EPRYVNDSGK SIQNWVSEMA PYVKSIDSNH MLEIGLEGFY 240 SETMLQKKQF NPNTAQVGTD FISNNQIPQI DFATIHIYPD QWIQGSEETT QNVFVDKWIG 300 AHIQDSNTVL GKPIIIAEFG KSSKSAGYSI DKRDSYFKKV YNAISTSAIS GGSCAGGIFW 360 QLLSQGMDNM GDGYEVIFEN SLSTSQVIKQ QSLKMSSIRK QN* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00150 | Cellulase | 0.002 | 68 | 338 | 278 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 0.001 | 69 | 230 | 172 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
COG3934 | COG3934 | 1.0e-22 | 69 | 336 | 274 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG88068.1 | 0 | 5 | 398 | 10 | 409 | endo-1,4-beta-mannanase [Glycine max] |
EMBL | CAC08442.1 | 0 | 30 | 398 | 45 | 415 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
RefSeq | XP_002281804.1 | 0 | 12 | 400 | 8 | 400 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302695.1 | 0 | 9 | 402 | 6 | 407 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515142.1 | 0 | 5 | 398 | 12 | 403 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 29 | 398 | 6 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 28 | 374 | 13 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 28 | 374 | 13 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 28 | 374 | 13 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 28 | 374 | 13 | 356 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |