Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g085350.1 |
Family | GH5 |
Protein Properties | Length: 459 Molecular Weight: 52037.3 Isoelectric Point: 8.0982 |
Chromosome | Chromosome/Scaffold: 1 Start: 22566777 End: 22572214 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 100 | 427 | 1.9e-29 |
NGKTHYVNGFNSYWLMIMASDPSTSSKVTSNFQQASRHGLNVGRTWACNDGGYKALQISPGKYDENVFRGLDFVISESKKYGVQLILGLVNNWNALGGKH KYVQWARERGQHVKSDDDFFTHPVVKQYYKNHVKAVLTRNNTINGVLYKDDPTIFAWELINEPRYVNDSGNSIQNWVREMATFVKSIDNKHLLEIGLEGF YAETTPQKQFNLNSVKVGTDFISNNQIPQIDFATIHVYPDEWLQGSNETAKSHFVDEWIEAHIQDSNTILKKPLVIAEFGKSSKSHGYSIAIRDNYFKKV YNAISRSAINGGSCAGGIFWQLLSQGMD |
Full Sequence |
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Protein Sequence Length: 459 Download |
MAAKEVVDDG KREESMRERK KGSDSNNFWQ DLKDGRRRWA TVVGGIIYDE EGELQENDSN 60 FLQDRTKEYL ALVIFQHGNS KRVNVGGGFV QRKGTHFILN GKTHYVNGFN SYWLMIMASD 120 PSTSSKVTSN FQQASRHGLN VGRTWACNDG GYKALQISPG KYDENVFRGL DFVISESKKY 180 GVQLILGLVN NWNALGGKHK YVQWARERGQ HVKSDDDFFT HPVVKQYYKN HVKAVLTRNN 240 TINGVLYKDD PTIFAWELIN EPRYVNDSGN SIQNWVREMA TFVKSIDNKH LLEIGLEGFY 300 AETTPQKQFN LNSVKVGTDF ISNNQIPQID FATIHVYPDE WLQGSNETAK SHFVDEWIEA 360 HIQDSNTILK KPLVIAEFGK SSKSHGYSIA IRDNYFKKVY NAISRSAING GSCAGGIFWQ 420 LLSQGMDTYG DGYEVVFENC PSTGEIIKQQ SMKMSHIK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
CHL00206 | ycf2 | 0.0001 | 19 | 69 | 53 | + Ycf2; Provisional | ||
COG3934 | COG3934 | 1.0e-20 | 97 | 433 | 343 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABG88068.1 | 0 | 70 | 457 | 18 | 409 | endo-1,4-beta-mannanase [Glycine max] |
EMBL | CAC08442.1 | 0 | 90 | 457 | 45 | 415 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
RefSeq | XP_002281804.1 | 0 | 70 | 458 | 9 | 399 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002302695.1 | 0 | 72 | 454 | 13 | 400 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515142.1 | 0 | 84 | 457 | 31 | 403 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 89 | 457 | 6 | 372 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 9.94922e-44 | 88 | 451 | 13 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 9.94922e-44 | 88 | 451 | 13 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 9.94922e-44 | 88 | 451 | 13 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 9.94922e-44 | 88 | 451 | 13 | 380 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JK974111 | 398 | 70 | 459 | 0 |
HO794665 | 385 | 77 | 459 | 0 |
HO798074 | 355 | 105 | 458 | 0 |
HO780470 | 346 | 114 | 458 | 0 |
DY296355 | 326 | 134 | 458 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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