Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g086030.1 |
Family | GH28 |
Protein Properties | Length: 602 Molecular Weight: 66842.5 Isoelectric Point: 6.8506 |
Chromosome | Chromosome/Scaffold: 1 Start: 22837258 End: 22840904 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 261 | 547 | 0 |
ELPGGRHRSLIYGCNLTDVIITGNNGTIDGQGSIWWSKFRNKTLDHTRPHLVELINSTEVLISNATFLNSPFWTIHPVYCSNVTVQNVTIIVPFGSPNTD GIDPDSSDNVCIEDCYISTGDDLISIKSGWDEYGISFGRPSTNISIHRLTGRTTSAGIAIGSEMSGGVSEVYAEDIYIFDSKSAIRIKTSPGRGGYVRNV YISNMTLINVDIAIRFTGLYGEHPDDSYDRDALPVIERITVVNVIGENIKRAGLIQGIKGDNFVDICLSNITLNVSKNNPWNCSDVK |
Full Sequence |
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Protein Sequence Length: 602 Download |
MFVQPNLDNF RRNFLCGLRI LCRWLVSLSP SIEASNSTTI DVIEKLPDVF LVLALICCSS 60 WTVWSSSSCK QINIKEVRPH SVSITEFGAV GDGITLNTKA FQNAIFYLNS YADKGGAKLF 120 VPAGRWLTGS FDLISHLTLW LDKDAVILGS TVRHSLLPLF VRSAVFARWK LSNYLKPITL 180 NLCKVYLVLF NFVLNMPSLY KLCLYCINRL ESNKLGSLIC FGPCGLHYDI VCETNAVLCL 240 LQNSEDWPVV DPLPSYGRGR ELPGGRHRSL IYGCNLTDVI ITGNNGTIDG QGSIWWSKFR 300 NKTLDHTRPH LVELINSTEV LISNATFLNS PFWTIHPVYC SNVTVQNVTI IVPFGSPNTD 360 GIDPDSSDNV CIEDCYISTG DDLISIKSGW DEYGISFGRP STNISIHRLT GRTTSAGIAI 420 GSEMSGGVSE VYAEDIYIFD SKSAIRIKTS PGRGGYVRNV YISNMTLINV DIAIRFTGLY 480 GEHPDDSYDR DALPVIERIT VVNVIGENIK RAGLIQGIKG DNFVDICLSN ITLNVSKNNP 540 WNCSDVKGYS ELVSPESCEQ LNERIFPDHV SNCYKLPYII KSSDVIKSSS NRNKVAWLQS 600 W* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5434 | PGU1 | 5.0e-13 | 82 | 150 | 69 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
PLN03003 | PLN03003 | 3.0e-25 | 276 | 514 | 247 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 8.0e-31 | 271 | 474 | 211 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-43 | 254 | 541 | 297 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU18828.1 | 7.00649e-44 | 56 | 151 | 17 | 112 | unknown [Glycine max] |
GenBank | ACU18828.1 | 0 | 227 | 596 | 97 | 462 | unknown [Glycine max] |
EMBL | CBI37055.1 | 3e-40 | 59 | 150 | 20 | 111 | unnamed protein product [Vitis vinifera] |
EMBL | CBI37055.1 | 0 | 227 | 601 | 97 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 227 | 601 | 148 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1e-33 | 306 | 537 | 187 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_D | 0.001 | 80 | 139 | 26 | 82 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1e-33 | 306 | 537 | 187 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0.001 | 80 | 139 | 26 | 82 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1e-33 | 306 | 537 | 187 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BG449648 | 221 | 293 | 513 | 0 |
FE674319 | 255 | 227 | 481 | 0 |
EY402823 | 267 | 262 | 527 | 0 |
DT758129 | 269 | 227 | 494 | 0 |
FE674319 | 35 | 117 | 151 | 0.00000000008 |
Sequence Alignments (This image is cropped. Click for full image.) |
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