y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g086540.1 |
Family | CE8 |
Protein Properties | Length: 348 Molecular Weight: 38787.6 Isoelectric Point: 9.2323 |
Chromosome | Chromosome/Scaffold: 1 Start: 23076046 End: 23077809 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 51 | 340 | 0 |
KVSQDGSAQFKSITEALNSIQPYNIRRVIISIAPGYYREKIVVPKTLPFITFLGDVRDPPTITGNDTQSVTGSDGAQLRTFNSATVAVNASYFMAININF ENTASFPIGSKVEQAVAVRITGNKTAFYNCTFSGVQDTLYDHKGLHYFNNCTIKGSVDFICGHGKSLYEGCTIRSIANNMTSITAQSGSNPSYDSGFSFK NSMVIGDGPTYLGRPWGNYSQVVFSYTYMDNSVLPKGWEDWNDTKRYMNAYYGEYKCSGPGSNTAGRVPWARMLNDKEAQVFIGTQYIDG |
Full Sequence |
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Protein Sequence Length: 348 Download |
MESDFDKWIS WNVKNYQRKT IMEKRYRNVS GNVQGLDPKL KKAESNKVRL KVSQDGSAQF 60 KSITEALNSI QPYNIRRVII SIAPGYYREK IVVPKTLPFI TFLGDVRDPP TITGNDTQSV 120 TGSDGAQLRT FNSATVAVNA SYFMAININF ENTASFPIGS KVEQAVAVRI TGNKTAFYNC 180 TFSGVQDTLY DHKGLHYFNN CTIKGSVDFI CGHGKSLYEG CTIRSIANNM TSITAQSGSN 240 PSYDSGFSFK NSMVIGDGPT YLGRPWGNYS QVVFSYTYMD NSVLPKGWED WNDTKRYMNA 300 YYGEYKCSGP GSNTAGRVPW ARMLNDKEAQ VFIGTQYIDG NTWLISP* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02671 | PLN02671 | 1.0e-90 | 52 | 344 | 295 | + pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-94 | 45 | 344 | 300 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-95 | 52 | 344 | 295 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 1.0e-121 | 2 | 347 | 350 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 7.0e-124 | 8 | 344 | 343 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79461.1 | 0 | 2 | 347 | 33 | 381 | hypothetical protein [Vitis vinifera] |
GenBank | EEC69509.1 | 0 | 5 | 347 | 70 | 411 | hypothetical protein OsI_38743 [Oryza sativa Indica Group] |
RefSeq | NP_001067039.1 | 0 | 5 | 347 | 69 | 410 | Os12g0563700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002320279.1 | 0 | 58 | 344 | 1 | 287 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002443368.1 | 0 | 5 | 347 | 79 | 428 | hypothetical protein SORBIDRAFT_08g018360 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 52 | 344 | 11 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 1e-39 | 52 | 346 | 7 | 306 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 3e-21 | 46 | 338 | 5 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 3e-21 | 46 | 338 | 5 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 3e-21 | 46 | 338 | 5 | 334 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
CA990640 | 212 | 53 | 264 | 0 |
EV258064 | 203 | 1 | 203 | 0 |
FY465102 | 236 | 1 | 236 | 0 |
DT739130 | 255 | 87 | 340 | 0 |
FY469202 | 220 | 1 | 220 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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