Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g088160.1 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 43021.8 Isoelectric Point: 7.6296 |
Chromosome | Chromosome/Scaffold: 1 Start: 23855049 End: 23856858 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 393 | 0 |
AACKTSTVPATVLIPAGTFVTGQTLFAGPCTSPKPITVEIVGKAQATTDLSEYYSPEWFQFENIDGLVLKGSGVFDGQGSISWPLNDCKQNKGNCASLPS SLKFDKIKNAIVQDVTSLNSMQFHFHLHGCSNISFTNLHITAPGNSPNTDGMHISSSDFITVTNSVIATGDDCISVGHSTSNITISGITCGPGHGISVGS LGKRPEEKTVNGVSVKNCTFIGSTNGARIKTWIGTAPAEAKNIVYEDLIMKDVQNPIVIDQSYGKKERVPSTSVWKISDAHFRRIKGTTVSNIPVSLQCS SKNPCENIEVADVELTYVGPQKSIPFANSCINAK |
Full Sequence |
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Protein Sequence Length: 408 Download |
MATTTNFFIL GILFISVIGA SGRSLLDNGS AGGIYDVTKF GAVADGKTDN VEKIRAAWQA 60 ACKTSTVPAT VLIPAGTFVT GQTLFAGPCT SPKPITVEIV GKAQATTDLS EYYSPEWFQF 120 ENIDGLVLKG SGVFDGQGSI SWPLNDCKQN KGNCASLPSS LKFDKIKNAI VQDVTSLNSM 180 QFHFHLHGCS NISFTNLHIT APGNSPNTDG MHISSSDFIT VTNSVIATGD DCISVGHSTS 240 NITISGITCG PGHGISVGSL GKRPEEKTVN GVSVKNCTFI GSTNGARIKT WIGTAPAEAK 300 NIVYEDLIMK DVQNPIVIDQ SYGKKERVPS TSVWKISDAH FRRIKGTTVS NIPVSLQCSS 360 KNPCENIEVA DVELTYVGPQ KSIPFANSCI NAKAIFGGKL NPAACVS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 2.0e-75 | 34 | 407 | 382 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 3.0e-77 | 37 | 374 | 344 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 8.0e-82 | 30 | 407 | 381 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-93 | 65 | 405 | 343 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-119 | 7 | 405 | 403 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 1 | 405 | 1 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 1 | 405 | 1 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002272193.1 | 0 | 34 | 405 | 55 | 426 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 58 | 402 | 8 | 350 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 1 | 402 | 1 | 410 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 6e-21 | 130 | 375 | 115 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_B | 2e-17 | 158 | 375 | 104 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ib4_A | 2e-17 | 158 | 375 | 104 | 322 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1ia5_A | 2e-17 | 158 | 375 | 104 | 322 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 8e-17 | 48 | 387 | 6 | 330 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |