Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g099850.1 |
Family | GH28 |
Protein Properties | Length: 476 Molecular Weight: 52020.6 Isoelectric Point: 7.3337 |
Chromosome | Chromosome/Scaffold: 1 Start: 29025235 End: 29027191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 434 | 0 |
ANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKGAVILASQDESEWPKLSFLPSYGREKDAPDGRFSSLIFGTNLTDVVITGNNGTIDGQGSTWWDKFQKK QLKITRPYMIEIMYSDQIQISNLTLINSPNWFVHPIYSSNIIINRLTILAPVDVPNTDGIDPDSCTNVLIEDNYIVSGDDCIAIKSGLDGYGIKVGKPSQ KIIVRRLTCISPKSAMVALGSEMSGGIQDIRIEDITAINTESAVRIKTAVGRGAYVKDIFVKGMNLNTMKYVFWMTGAYKSHAENGFDPKALPKISGINY RDIIAKNVTIAGQLDGISNDPFTGICISNVTIEMSAQKNNLPWNCTDVSG |
Full Sequence |
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Protein Sequence Length: 476 Download |
MSHQNMKSAI FGNSYVICVI SIVLILVSLA ECREPSSIKL NSFDYHAINC RKHNAVLTDF 60 GAVGDGKTLN TKAFNSAITN LSQYANDGGA QLIVPPGKWL TGSFNLTSHF TLFLQKGAVI 120 LASQDESEWP KLSFLPSYGR EKDAPDGRFS SLIFGTNLTD VVITGNNGTI DGQGSTWWDK 180 FQKKQLKITR PYMIEIMYSD QIQISNLTLI NSPNWFVHPI YSSNIIINRL TILAPVDVPN 240 TDGIDPDSCT NVLIEDNYIV SGDDCIAIKS GLDGYGIKVG KPSQKIIVRR LTCISPKSAM 300 VALGSEMSGG IQDIRIEDIT AINTESAVRI KTAVGRGAYV KDIFVKGMNL NTMKYVFWMT 360 GAYKSHAENG FDPKALPKIS GINYRDIIAK NVTIAGQLDG ISNDPFTGIC ISNVTIEMSA 420 QKNNLPWNCT DVSGVASNAV PKPCDMLPEK KIECPFPTDK LPIENVQFKT CNFQS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-18 | 37 | 350 | 327 | + polygalacturonase | ||
PLN02218 | PLN02218 | 8.0e-22 | 57 | 445 | 400 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-26 | 57 | 441 | 401 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-28 | 153 | 437 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-56 | 55 | 357 | 326 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 6 | 475 | 1 | 464 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 11 | 475 | 7 | 473 | unknown [Glycine max] |
RefSeq | XP_002305262.1 | 0 | 44 | 475 | 3 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 19 | 475 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 15 | 475 | 11 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.4013e-45 | 57 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.4013e-45 | 57 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.4013e-45 | 57 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.4013e-45 | 57 | 417 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.00000000000001 | 57 | 428 | 159 | 551 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |