Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g100040.1 |
Family | GH28 |
Protein Properties | Length: 482 Molecular Weight: 52829.2 Isoelectric Point: 6.845 |
Chromosome | Chromosome/Scaffold: 1 Start: 29093047 End: 29095122 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 435 | 0 |
ANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDSVILASQDESEWPQFPVLPSYGSGRNASDGRFSSLVFGTNLTDVIITGNNGTIDGQGSYWWDKFHKG QMKITRPYMIEIMYSDQIQISNLTLINSPSWFVHPVYSSNIIINGLTILAPVDIPNTDGIDPDSCTNVRIEDNYIVSGDDCIAIKSGWDEYGIKFGKPSQ QIIIRRLTCISPKSAMVALGSEMSGGIQDVRVEDVTAIKTESAVRIKTAIGRGAYVKDIFVKGMNLDTMKYVFWMTGSYKSHPDNGFDPNALPKISEINY RDVTAKNVTIAGKLDGISNDPFTGICVSNATIEMSAHKKKLPWNCTDVSG |
Full Sequence |
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Protein Sequence Length: 482 Download |
MSHKNMMKSP VFENSYVIGV ISVLLIFGSL AECKEPSSSK LKNFDYPAIN CRKHSAVLTD 60 FGGVGDGKTL NTKAFNSAIT NLSQYANDGG AQLIVPPGKW LTGSFNLTSH FTLFLQKDSV 120 ILASQDESEW PQFPVLPSYG SGRNASDGRF SSLVFGTNLT DVIITGNNGT IDGQGSYWWD 180 KFHKGQMKIT RPYMIEIMYS DQIQISNLTL INSPSWFVHP VYSSNIIING LTILAPVDIP 240 NTDGIDPDSC TNVRIEDNYI VSGDDCIAIK SGWDEYGIKF GKPSQQIIIR RLTCISPKSA 300 MVALGSEMSG GIQDVRVEDV TAIKTESAVR IKTAIGRGAY VKDIFVKGMN LDTMKYVFWM 360 TGSYKSHPDN GFDPNALPKI SEINYRDVTA KNVTIAGKLD GISNDPFTGI CVSNATIEMS 420 AHKKKLPWNC TDVSGVTSNV SPTPCELLAE KEKFECPFPT DKLTIENVQF KTCNFKSSVI 480 R* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 4.0e-21 | 39 | 439 | 415 | + polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-21 | 58 | 418 | 372 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-25 | 58 | 355 | 305 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 4.0e-27 | 146 | 433 | 294 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-58 | 47 | 348 | 329 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 7 | 479 | 1 | 466 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 6 | 477 | 1 | 473 | unknown [Glycine max] |
RefSeq | NP_191708.1 | 0 | 38 | 478 | 27 | 476 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002327490.1 | 0 | 20 | 477 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 6 | 477 | 1 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 1.00053e-42 | 58 | 418 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 1.00053e-42 | 58 | 418 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 1.00053e-42 | 58 | 418 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 1.00053e-42 | 58 | 418 | 30 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 0.000000000000003 | 5 | 458 | 105 | 582 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |