Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g100050.1 |
Family | GH28 |
Protein Properties | Length: 479 Molecular Weight: 52337.7 Isoelectric Point: 5.4516 |
Chromosome | Chromosome/Scaffold: 1 Start: 29096283 End: 29098272 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 85 | 433 | 0 |
ANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILGSQDESEWPQLLVLPSYGRGRDAPAGRFSSLIFGTNLTDVIITGDNGTIDGQGSYWWDKFHKK QLTLTRPYMIEIMYSDQIQISNLTLINSPTWFVHPIYSSNIIINGLTILAPVDSPNTDGINPDSCTNVRIEDNFIVSGDDCIAIKSGWDEYGIKVGMPSQ QIIIRRLTCISPDSAMVALGSEMSGGIQDVRIEDVTAINTESAIRIKSAVGRGAFVKDIFVKGMDLNTMKYVFWMTGSYGDHPDNGFDPNALPKISGINY RDVTAKNVTIAGKLEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDIS |
Full Sequence |
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Protein Sequence Length: 479 Download |
MSHQNMKSAR FENSYVIGVI SVVLILGSLA ECRVPSSIKL NNFDYPAINC RKHSAVLTDF 60 GAVGDGKTLN TKAFNAAITN LSQYANDGGA QLIVPPGKWL TGSFNLTSHF TLFLQKDAVI 120 LGSQDESEWP QLLVLPSYGR GRDAPAGRFS SLIFGTNLTD VIITGDNGTI DGQGSYWWDK 180 FHKKQLTLTR PYMIEIMYSD QIQISNLTLI NSPTWFVHPI YSSNIIINGL TILAPVDSPN 240 TDGINPDSCT NVRIEDNFIV SGDDCIAIKS GWDEYGIKVG MPSQQIIIRR LTCISPDSAM 300 VALGSEMSGG IQDVRIEDVT AINTESAIRI KSAVGRGAFV KDIFVKGMDL NTMKYVFWMT 360 GSYGDHPDNG FDPNALPKIS GINYRDVTAK NVTIAGKLEG ISNDPFTGIC VSNVTIEMSA 420 HKKKLPWNCT DISGVTSNVV PKPCELLQEK EIECPFPTDK LAIENVQFKT CNFQSSVF* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 5.0e-19 | 51 | 332 | 299 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-22 | 57 | 417 | 368 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 7.0e-26 | 57 | 477 | 438 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 5.0e-29 | 153 | 444 | 298 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 8.0e-55 | 46 | 357 | 339 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 6 | 478 | 1 | 467 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 10 | 478 | 6 | 476 | unknown [Glycine max] |
RefSeq | XP_002278930.1 | 0 | 40 | 473 | 38 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 19 | 475 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 15 | 475 | 11 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 5.60519e-45 | 24 | 417 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 5.60519e-45 | 24 | 417 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 5.60519e-45 | 24 | 417 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 5.60519e-45 | 24 | 417 | 1 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 2e-16 | 57 | 452 | 159 | 577 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |