Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr1g100060.1 |
Family | GH28 |
Protein Properties | Length: 488 Molecular Weight: 53562.4 Isoelectric Point: 7.3342 |
Chromosome | Chromosome/Scaffold: 1 Start: 29100579 End: 29104014 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 94 | 442 | 0 |
ANDGGAQLIVPPGKWLTGSFNLTSHFTLFLQKDAVILASQYESDWPQLPALPSYGRGREKPGGRFSSLIFGTNLIDVIITGNNGTIDGQGSTWWDKFQKK QLKITRPYMIEIMYSDQIQISNLTLVNSPSWFVHPVYSSNIIINGLTILAPVDVPNTDGIDPDSSTNVLIEDNYIVSGDDCIAIKSGWDEYGIKVGKPSQ NIIVRRLTCISPKSALVALGSEMSGGIQDVRIEDVTAINTESAVRIKSAVGRGAFVKDIFVKGMDLNTLKYVFWMTGSYGDHPDNGFDPNALPKISGINY RDVTAKNVTIAGKVEGISNDPFTGICVSNVTIEMSAHKKKLPWNCTDIS |
Full Sequence |
---|
Protein Sequence Length: 488 Download |
MWFWAFRLLQ MAKFTLQQGE AMSYVIRVIS VVVILGTLAE CRIPSISKLN NFDYPAINCR 60 KHSAVLTDFG GVGDGKTLNT KAFNSAITNL SQYANDGGAQ LIVPPGKWLT GSFNLTSHFT 120 LFLQKDAVIL ASQYESDWPQ LPALPSYGRG REKPGGRFSS LIFGTNLIDV IITGNNGTID 180 GQGSTWWDKF QKKQLKITRP YMIEIMYSDQ IQISNLTLVN SPSWFVHPVY SSNIIINGLT 240 ILAPVDVPNT DGIDPDSSTN VLIEDNYIVS GDDCIAIKSG WDEYGIKVGK PSQNIIVRRL 300 TCISPKSALV ALGSEMSGGI QDVRIEDVTA INTESAVRIK SAVGRGAFVK DIFVKGMDLN 360 TLKYVFWMTG SYGDHPDNGF DPNALPKISG INYRDVTAKN VTIAGKVEGI SNDPFTGICV 420 SNVTIEMSAH KKKLPWNCTD ISGVTSNVVP KPCELLKEKE IECPFPRDKL PIENVQFKTC 480 NFQSSVF* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-18 | 43 | 447 | 419 | + polygalacturonase | ||
PLN02218 | PLN02218 | 9.0e-23 | 66 | 426 | 372 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 2.0e-25 | 66 | 450 | 405 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-29 | 168 | 453 | 295 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 1.0e-55 | 55 | 356 | 329 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD32865.1 | 0 | 23 | 487 | 9 | 467 | Glycoside hydrolase, family 28 [Medicago truncatula] |
GenBank | ACU17976.1 | 0 | 23 | 487 | 10 | 476 | unknown [Glycine max] |
RefSeq | XP_002278930.1 | 0 | 49 | 482 | 38 | 475 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002327490.1 | 0 | 28 | 484 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 21 | 484 | 8 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00018e-42 | 49 | 426 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00018e-42 | 49 | 426 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00018e-42 | 49 | 426 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00018e-42 | 49 | 426 | 15 | 411 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 1e-16 | 66 | 461 | 159 | 577 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
FC906391 | 300 | 54 | 353 | 0 |
DY294251 | 300 | 54 | 353 | 0 |
DY294251 | 46 | 353 | 398 | 0.0000000000002 |
DY294251 | 30 | 410 | 439 | 0.0000000000002 |
DY294251 | 25 | 391 | 415 | 0.0000000000002 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|