Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g106770.1 |
Family | GH10 |
Protein Properties | Length: 439 Molecular Weight: 50318.1 Isoelectric Point: 9.6147 |
Chromosome | Chromosome/Scaffold: 1 Start: 31414912 End: 31417264 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 195 | 426 | 0 |
TKANFPLGCGMNHYILTNFEYQRWFVSRFKYTAFTNEMKWYSTERFQGQENYTIPDAMMKFAKENGISVRGHTVFWDDETFQPKWVKFLSPEELRKAAAK RIRSVVSRYRGQLIAWDVVNENVHYHFFENKLGENASPIYYSTAYHLDPEIKMFMNEFNTIESSGDRVVSPPNYIRKLKEIQRFPGTAGISLAIGVQGHF RLGRPNYAYMRSSLDLLGATGLPIWLTETSVN |
Full Sequence |
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Protein Sequence Length: 439 Download |
MTWQCVTEPK RAQYGGGITV NPGFDHNING WKVFGNGTIE ERVSNNGNRF IVASNRTQPL 60 DSFSQKVQLK KGMIYTFSAW FQLSEGSEFV SVVFKINGSE FVRGGHVIAK HGCWSLLKGG 120 IVANFSSPAE ILFECENPTV ELWADSVSLQ PFTKKQWRSQ QDDSVERVRK SKVRFHVTHL 180 NKTEMEGASI VIKQTKANFP LGCGMNHYIL TNFEYQRWFV SRFKYTAFTN EMKWYSTERF 240 QGQENYTIPD AMMKFAKENG ISVRGHTVFW DDETFQPKWV KFLSPEELRK AAAKRIRSVV 300 SRYRGQLIAW DVVNENVHYH FFENKLGENA SPIYYSTAYH LDPEIKMFMN EFNTIESSGD 360 RVVSPPNYIR KLKEIQRFPG TAGISLAIGV QGHFRLGRPN YAYMRSSLDL LGATGLPIWL 420 TETSVNPQPN QVFLHFQN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 1.0e-6 | 16 | 99 | 89 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 6.0e-32 | 207 | 422 | 228 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-46 | 196 | 422 | 239 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 1.0e-61 | 232 | 422 | 203 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 2 | 432 | 37 | 467 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 2 | 432 | 31 | 461 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 1 | 432 | 1 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 5 | 432 | 8 | 435 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 4 | 432 | 22 | 450 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1i1x_A | 6e-24 | 202 | 425 | 19 | 240 | B Chain B, Crystal Structure Of Helicobacter Pylori Urease |
PDB | 1i1w_A | 6e-24 | 202 | 425 | 19 | 240 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
PDB | 2bnj_A | 9e-24 | 202 | 425 | 19 | 240 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1v0n_A | 1e-23 | 210 | 438 | 25 | 252 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
PDB | 1v0m_A | 1e-23 | 210 | 438 | 25 | 252 | A Chain A, The Xylanase Ta From Thermoascus Aurantiacus Utilizes Arabinose Decorations Of Xylan As Significant Substrate Specificity Determinants |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX529522 | 284 | 2 | 283 | 0 |
ES830806 | 289 | 82 | 368 | 0 |
FS328636 | 213 | 2 | 214 | 0 |
FS341211 | 208 | 2 | 209 | 0 |
FS329936 | 205 | 2 | 206 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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