Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g106790.1 |
Family | GH10 |
Protein Properties | Length: 582 Molecular Weight: 65405.1 Isoelectric Point: 6.4131 |
Chromosome | Chromosome/Scaffold: 1 Start: 31422438 End: 31432647 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 230 | 490 | 0 |
TKADFPFGCGMNYHILTNIEYQKWFVSRFKYTTFTNEMKWYSTEKIQGQENYTIPDAMLKFAKENGISVRGHAILWDDERFQPQWVKSLSPEELREAAAK RMKSVVSRYSGQLIAWDVVNENVHNRFFEDKLGENASAVYYSTAYYLDPNTSMFMNEFNTIEFSPDQVASPPNYIRKLKQIQQFPGTTGMLLTIGVQGHF SRGVPNIAYMRSGLDLLGATGLPIWLTESSVDSNPNQAMYFEEILREAYSHPDVEGIIMFV |
Full Sequence |
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Protein Sequence Length: 582 Download |
MKVATELCIF LFNTSCLVLI SGLQLQSMPY DYSATTECVP EPQRAQYGGG IIVNPGFDHN 60 IKDWTVFEHG TIKERTSNDG NTFIVVSNRT QPLDSLSQKV QLEKEMIYIF SAWFQLSEGS 120 DTISVVFKIN GSELVKGGHV IAKYGCWSLL KGGIVAKFSS PAEILFESKN PSPGVELWTD 180 SVSLQPFNKT QWRSHQADSI ERVRKSKVTF QVNHLNETSL EGATVVIKQT KADFPFGCGM 240 NYHILTNIEY QKWFVSRFKY TTFTNEMKWY STEKIQGQEN YTIPDAMLKF AKENGISVRG 300 HAILWDDERF QPQWVKSLSP EELREAAAKR MKSVVSRYSG QLIAWDVVNE NVHNRFFEDK 360 LGENASAVYY STAYYLDPNT SMFMNEFNTI EFSPDQVASP PNYIRKLKQI QQFPGTTGML 420 LTIGVQGHFS RGVPNIAYMR SGLDLLGATG LPIWLTESSV DSNPNQAMYF EEILREAYSH 480 PDVEGIIMFV GPAQAGFTNT QLADANFQNT PTGDVVDKLI GEWGTGTHTA IADSRGMIDI 540 SLHHGDYDVT VTHPLIRYSK KLNISVRKGF SPETIHVKMH A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 0.001 | 49 | 132 | 89 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-29 | 247 | 457 | 220 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 6.0e-49 | 231 | 511 | 306 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 3.0e-72 | 267 | 516 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 1 | 581 | 1 | 581 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 23 | 581 | 18 | 575 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 35 | 577 | 2 | 540 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 38 | 580 | 8 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
RefSeq | XP_002532422.1 | 0 | 37 | 579 | 22 | 562 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v0n_A | 2e-23 | 236 | 464 | 16 | 243 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1v0m_A | 2e-23 | 236 | 464 | 16 | 243 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1v0l_A | 2e-23 | 236 | 464 | 16 | 243 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1v0k_A | 2e-23 | 236 | 464 | 16 | 243 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 1od8_A | 2e-23 | 236 | 464 | 16 | 243 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |