Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g106800.1 |
Family | GH10 |
Protein Properties | Length: 672 Molecular Weight: 77412.8 Isoelectric Point: 7.7304 |
Chromosome | Chromosome/Scaffold: 1 Start: 31435415 End: 31440504 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 319 | 601 | 0 |
QTKADFPFGCGMNHHILTNIDYQEWFVSRFKYTTFTNEMKWYSTEIIPGQENYTISDAMLEFAKDNGISVRGHNIFWDDEKYQPEWVKYLSPDELRKAAK KRIESVVKRYKGELIAWDVVNENVHFHFYEDKLGENASELYYLKAHELDPETKLFMNEYNTIEYSGDKVVSPPNYLKKLEEIMQSGEATEILFAIGLQGH FASGQPNLAYMRSGLDFLGNIGFPIWLTEASLDPQPNQAEYFEEVLREAYSHPAVEGIIMFAGPAQAGFNSTLLADTNFQTTP |
Full Sequence |
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Protein Sequence Length: 672 Download |
MSHRDSSDSK RRHSKLDREP SPKKYRRDRE RERLTTNGHS EPSKHSSQPP RSRSYYQVGR 60 STGQREADEK VYAQSKENNQ RLETGQSREQ RDEKSLAKLD GNFQRRDSFR ERKDDPTPSV 120 RKRPAFREKK IPVDSREANP AATVTVKSSH TSHPPERNER KEERSSNPNH LDRPEKRIAE 180 DRESNKREPR KDGFSSRVRY GGSGGNSNHR GRDKFNGRQD NHPIKTQTEK WKHDLYQEVN 240 KDSIPKNEDD QIAKLEALLS NNSSVEIWAD SVSLQPFTKK EWRSHQDNNI ERVRKSRVRF 300 HVSNVNETAL EGATVVITQT KADFPFGCGM NHHILTNIDY QEWFVSRFKY TTFTNEMKWY 360 STEIIPGQEN YTISDAMLEF AKDNGISVRG HNIFWDDEKY QPEWVKYLSP DELRKAAKKR 420 IESVVKRYKG ELIAWDVVNE NVHFHFYEDK LGENASELYY LKAHELDPET KLFMNEYNTI 480 EYSGDKVVSP PNYLKKLEEI MQSGEATEIL FAIGLQGHFA SGQPNLAYMR SGLDFLGNIG 540 FPIWLTEASL DPQPNQAEYF EEVLREAYSH PAVEGIIMFA GPAQAGFNST LLADTNFQTT 600 PTGQVVDNLI LEWGSGPYTA IADSRGIVDI SLHHGDYDVT FTHPLTQNSK KLNISVRKGF 660 SQENIHVKMH A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 2.0e-32 | 319 | 547 | 240 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 8.0e-57 | 321 | 601 | 304 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-73 | 357 | 606 | 273 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU19437.1 | 0 | 260 | 671 | 170 | 581 | unknown [Glycine max] |
RefSeq | XP_002313181.1 | 0 | 253 | 671 | 156 | 575 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313182.1 | 0 | 260 | 667 | 135 | 540 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313183.1 | 0 | 258 | 667 | 95 | 506 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532419.1 | 0 | 260 | 670 | 138 | 549 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v0n_A | 2e-23 | 326 | 580 | 16 | 267 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 1v0m_A | 2e-23 | 326 | 580 | 16 | 267 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 1v0l_A | 2e-23 | 326 | 580 | 16 | 267 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 1v0k_A | 2e-23 | 326 | 580 | 16 | 267 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 1od8_A | 2e-23 | 326 | 580 | 16 | 267 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AW774387 | 200 | 473 | 672 | 0 |
EX524107 | 262 | 16 | 268 | 0 |
DV141191 | 248 | 317 | 564 | 0 |
FG995791 | 240 | 433 | 672 | 0 |
GO011972 | 223 | 314 | 536 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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