Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr1g116870.1 |
Family | CBM43 |
Protein Properties | Length: 355 Molecular Weight: 37475.4 Isoelectric Point: 7.3042 |
Chromosome | Chromosome/Scaffold: 1 Start: 34076091 End: 34077483 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 276 | 353 | 1.3e-30 |
WCVAKASVPDPIIEEAMNYACWSGADCSSIQPNGPCFQPDSVFAHASYAFNSYWQRTKASGGTCEFGGTAVLVSVDPS |
Full Sequence |
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Protein Sequence Length: 355 Download |
MATSKGRRSA RMLLFCLTLA TISLTHCDAN RSIRLLKAPK HRRIVINKNP KKLKIMKHFD 60 FDPSIYSSNA QPYGISSPLS LPPYESLAPG KSPPYCVYPP PSSSTPSTTI PTPTSSQPTQ 120 PSPPYTSPDL PSQSPPPGPT TVTPSPPENF PTPTPEIVPS PPDNFPTPTP EIVPSPPSNI 180 PGSPEPILNP PIIFPGPPGP SMSPPYFEPA PPYYEPTPPF IPSPTGGSGS IPSPPSTFQS 240 PSGGTIPSPT VYQPPVVYPP PSVPPRSNTA PQASLWCVAK ASVPDPIIEE AMNYACWSGA 300 DCSSIQPNGP CFQPDSVFAH ASYAFNSYWQ RTKASGGTCE FGGTAVLVSV DPSE* 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 3.0e-23 | 275 | 346 | 77 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 6.0e-36 | 275 | 353 | 79 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAD30228.1 | 5.99994e-41 | 198 | 354 | 216 | 345 | AC007202_10 T8K14.10 [Arabidopsis thaliana] |
RefSeq | NP_001117621.1 | 2e-40 | 198 | 353 | 259 | 387 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002264966.1 | 0 | 8 | 353 | 9 | 359 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312230.1 | 0 | 67 | 354 | 3 | 293 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516415.1 | 0 | 68 | 353 | 4 | 254 | conserved hypothetical protein [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-16 | 273 | 353 | 10 | 90 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |