y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g008240.1 |
Family | GH3 |
Protein Properties | Length: 776 Molecular Weight: 83744.2 Isoelectric Point: 6.4517 |
Chromosome | Chromosome/Scaffold: 2 Start: 1478555 End: 1483094 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 87 | 337 | 0 |
VEVSRLGIPKYEWWSEALHGVSNIGPGTHFSSLVPGATSFPMPILTAASFNTSLFQAIGSVVSNEARAMYNVGLAGLTYWSPNINIFRDPRWGRGQETPG EDPLLSSKYAAGYVKGLQQTDDGDSDKLKVAACCKHYTAYDVDNWKGVQRYTFDAVVSQQDLDDTFQPPFKSCVIDGNVASVMCSYNKVNGKPTCADPDL LKGVIRGKWKLNGYIVSDCDSVEVLFKDQHYTKTPEEAAAKTILSGLDLDC |
Full Sequence |
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Protein Sequence Length: 776 Download |
MANTKNREPK VSSVFLCFSI FYVAVLLNCN HVYGQTSTVF ACDVAKNTNV SSYGFCDKSL 60 SVEDRVSDLV KRLTLQEKIG NLGNSAVEVS RLGIPKYEWW SEALHGVSNI GPGTHFSSLV 120 PGATSFPMPI LTAASFNTSL FQAIGSVVSN EARAMYNVGL AGLTYWSPNI NIFRDPRWGR 180 GQETPGEDPL LSSKYAAGYV KGLQQTDDGD SDKLKVAACC KHYTAYDVDN WKGVQRYTFD 240 AVVSQQDLDD TFQPPFKSCV IDGNVASVMC SYNKVNGKPT CADPDLLKGV IRGKWKLNGY 300 IVSDCDSVEV LFKDQHYTKT PEEAAAKTIL SGLDLDCGSY LGQYTGGAVK QGLVDEASIN 360 NAVSNNFATL MRLGFFDGDP SKQPYGNLGP KDVCTPENQE LAREAARQGI VLLKNSPGSL 420 PLSSKAIKSL AVIGPNANAT RVMIGNYEGI PCKYTSPLQG LTAFVPTSYA PGCPDVQCAN 480 AQIDDAAKIA ASADATIIVV GANLAIEAES LDRVNILLPG QQQQLVNEVA NVSKGPVILV 540 IMSGGGMDVS FAKTNDKITS ILWVGYPGEA GGAAIADVIF GSYNPSGRLP MTWYPQSYVE 600 KIPMTNMNMR SDPATGYPGR TYRFYKGETV FSFGDGMSFG TVEHKIVKAP QLVSVPLAED 660 HECRSLECKS LDVADEHCQN LAFDIHLSVK NMGKMSSSHS VLLFFTPPNV HNAPQKHLLG 720 FEKVQLAGKS EGMVRFKVDV CNDLSVVDEL GNRKVPLGDH MLHVGNLKHS LSVRI* 780 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 2.0e-48 | 410 | 641 | 239 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 2.0e-58 | 84 | 474 | 400 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 4.0e-65 | 74 | 365 | 322 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 4.0e-74 | 60 | 740 | 765 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 20 | 775 | 777 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
Swiss-Prot | A5JTQ2 | 0 | 2 | 775 | 1 | 774 | XYL1_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 1; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 1; Short=MsXyl1; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
Swiss-Prot | A5JTQ3 | 0 | 1 | 775 | 1 | 774 | XYL2_MEDVA RecName: Full=Beta-xylosidase/alpha-L-arabinofuranosidase 2; AltName: Full=Xylan 1,4-beta-xylosidase/Alpha-N-arabinofuranosidase 2; Short=MsXyl2; Includes: RecName: Full=Beta-xylosidase; AltName: Full=1,4-beta-D-xylan xylohydrolase; AltName: Full=Xylan 1,4-beta-xylosidase; Includes: RecName: Full=Alpha-N-arabinofuranosidase; AltName: Full=Alpha-L-arabinofuranosidase; Short=Arabinosidase; Flags: Precursor |
EMBL | CBI39114.1 | 0 | 1 | 775 | 1 | 774 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264183.1 | 0 | 1 | 775 | 193 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002513707.1 | 0 | 5 | 775 | 6 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 78 | 738 | 61 | 696 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3u48_A | 0 | 78 | 738 | 61 | 696 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3u4a_B | 0 | 78 | 738 | 61 | 696 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 3u4a_A | 0 | 78 | 738 | 61 | 696 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |
PDB | 2x41_A | 1e-36 | 64 | 644 | 2 | 605 | A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From Almond |