Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g029170.1 |
Family | GH28 |
Protein Properties | Length: 381 Molecular Weight: 41837.2 Isoelectric Point: 9.1452 |
Chromosome | Chromosome/Scaffold: 2 Start: 9766545 End: 9768056 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 26 | 369 | 0 |
LVPSTIYVPHGKFLLGRVTFRGECTNKDISIIIDGTLVAPSDYHVIGEASYWLTFENVSGVKIHGGVLDGKGTSLWDCKNSGKSCPMGAAVSSFFIVRNG TQYLSNHNFLYTWNFNSDNIIITGLTSLNSQMFHIVIRECRNVKVDGVKIIAPKNSPNTDGIHVQSSSDITILKPRIRTGDDCISIGPSTRNLWIEHVEC GPGHGISIGSLGWKLNEPGVKNVTVKSTTFTKTQNGFRIKSWGKPSNGFVRHVHFVHATMIDVQNPILIDQHYCPLYKGCSNEASGIMISDVLYKDIQGT SATKVAVRFECSSKQPCRRIKLEDLKLSYKNQVPKALCNHVAGT |
Full Sequence |
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Protein Sequence Length: 381 Download |
MWLILEPNQM VKPIPQNPSL LHGTKLVPST IYVPHGKFLL GRVTFRGECT NKDISIIIDG 60 TLVAPSDYHV IGEASYWLTF ENVSGVKIHG GVLDGKGTSL WDCKNSGKSC PMGAAVSSFF 120 IVRNGTQYLS NHNFLYTWNF NSDNIIITGL TSLNSQMFHI VIRECRNVKV DGVKIIAPKN 180 SPNTDGIHVQ SSSDITILKP RIRTGDDCIS IGPSTRNLWI EHVECGPGHG ISIGSLGWKL 240 NEPGVKNVTV KSTTFTKTQN GFRIKSWGKP SNGFVRHVHF VHATMIDVQN PILIDQHYCP 300 LYKGCSNEAS GIMISDVLYK DIQGTSATKV AVRFECSSKQ PCRRIKLEDL KLSYKNQVPK 360 ALCNHVAGTA SGMVQPQSCL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 8.0e-68 | 29 | 371 | 348 | + polygalacturonase | ||
PLN02793 | PLN02793 | 8.0e-72 | 29 | 380 | 360 | + Probable polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 7.0e-84 | 27 | 371 | 349 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-84 | 30 | 379 | 355 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 3.0e-113 | 29 | 380 | 353 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD33834.1 | 0 | 28 | 380 | 60 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
DDBJ | BAF42034.1 | 0 | 28 | 380 | 66 | 398 | polygalacturonase3 [Pyrus communis] |
EMBL | CAH18935.1 | 0 | 28 | 380 | 66 | 398 | polygalacturonase [Pyrus communis] |
RefSeq | XP_002331621.1 | 0 | 28 | 380 | 64 | 396 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529090.1 | 0 | 28 | 380 | 61 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 1e-20 | 142 | 353 | 159 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1czf_B | 0.0000000000007 | 134 | 353 | 128 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1czf_A | 0.0000000000007 | 134 | 353 | 128 | 345 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_B | 0.000000000006 | 26 | 371 | 25 | 338 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
PDB | 1ib4_A | 0.000000000006 | 26 | 371 | 25 | 338 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JZ191937 | 319 | 62 | 380 | 0 |
JZ192826 | 306 | 60 | 365 | 0 |
JZ194028 | 306 | 58 | 363 | 0 |
JZ192324 | 295 | 63 | 357 | 0 |
JZ195837 | 292 | 58 | 349 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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