| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr2g031490.1 |
| Family | AA7 |
| Protein Properties | Length: 543 Molecular Weight: 60180.1 Isoelectric Point: 9.5087 |
| Chromosome | Chromosome/Scaffold: 2 Start: 10934691 End: 10936319 |
| Description | FAD-binding Berberine family protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| AA7 | 73 | 298 | 0 |
| NARFNTTSTTKPLLIVTPKQPSHVQSTVICAKQVNIQIKIRSGGHDYEGISYVNQSPFIILDMFNLRTINVDIKNEVAYVQGGATLGEVYYRIYEKSKVH GFPAGVCPTVGVGGHFSGGGYGTMLRKYGLSVDNIIDAEIVDVKGRLLNRKSMGEDLFWAILGGGGASFGVVLSYTVKLVAVPETVTVFRIEKTLEQNAT DLVVQWQQVAPTTDNRLFMRLLLQPI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 543 Download |
| MAKSNPISLC YFSIPFFVLS VFFSASLAAP TESLYTTFLH CLTQNNTDPT ISNIVFSQTN 60 TSFSIVLKNY IRNARFNTTS TTKPLLIVTP KQPSHVQSTV ICAKQVNIQI KIRSGGHDYE 120 GISYVNQSPF IILDMFNLRT INVDIKNEVA YVQGGATLGE VYYRIYEKSK VHGFPAGVCP 180 TVGVGGHFSG GGYGTMLRKY GLSVDNIIDA EIVDVKGRLL NRKSMGEDLF WAILGGGGAS 240 FGVVLSYTVK LVAVPETVTV FRIEKTLEQN ATDLVVQWQQ VAPTTDNRLF MRLLLQPITS 300 KVVKGTKTIR ASVVAMFLGR AEELVGILGK QFPLLGLKKT DCIELSWINS VIWYNDADDF 360 NKGAKPESLL DRNLNSAAFG KRKSDYVQKA ISKDDLEGIW KKMIELGKVG FVFNPYGGKM 420 AEIPADATPF PHRAGNLFKI QFSVNWNDPA PNATVGFLNQ AKVLYSYMTP YVSKNPRSAY 480 INYRDLDIGI NSFGKNSYEE GEVYGTKYFN NNFDRLVKIK TAVDPDNFFR NEQSIPVLPG 540 KA* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| TIGR00387 | glcD | 0.009 | 87 | 260 | 187 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. |
| PRK11230 | PRK11230 | 6.0e-5 | 82 | 260 | 189 | + glycolate oxidase subunit GlcD; Provisional |
| pfam08031 | BBE | 1.0e-17 | 479 | 536 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. |
| pfam01565 | FAD_binding_4 | 5.0e-18 | 84 | 221 | 139 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
| COG0277 | GlcD | 5.0e-20 | 66 | 538 | 488 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002270139.1 | 0 | 29 | 539 | 22 | 531 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002299028.1 | 0 | 1 | 542 | 1 | 536 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002317087.1 | 0 | 24 | 542 | 20 | 535 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523157.1 | 0 | 33 | 542 | 35 | 539 | Reticuline oxidase precursor, putative [Ricinus communis] |
| RefSeq | XP_002523158.1 | 0 | 33 | 542 | 35 | 539 | Reticuline oxidase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vte_A | 0 | 28 | 539 | 1 | 514 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
| PDB | 4dns_B | 0 | 38 | 538 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 4dns_A | 0 | 38 | 538 | 13 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_B | 0 | 30 | 538 | 3 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
| PDB | 3tsj_A | 0 | 30 | 538 | 3 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |
