y
Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr2g032710.1 |
Family | GH28 |
Protein Properties | Length: 464 Molecular Weight: 50560.1 Isoelectric Point: 4.8386 |
Chromosome | Chromosome/Scaffold: 2 Start: 11148301 End: 11155191 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 91 | 415 | 0 |
KAACAVDSGVLLAPENYCFKITSTIFSGPCKPGLVFQIDGTLMAPDGPNCWPEADSKSQWLVFYRLDQMTLNGTGIIEGNGEQWWDLPCKPHRSPDGKTV SGPCVSPTMIRFFMSSNLVLRGLKIQNSPQFHVKFDGCQGVLIDELSISAPKLSPNTDGIHLGNTRDVGIYNSLISNGDDCISIGPGCSNVNVDGVTCAP THGISIGSLGVHNSHACVSNLTVRNSIIKESDNGLRIKTWQGGTGSVTGLTFDNIQMENVRNCINIDQFYCLSKECMNQTSAVYVNNISYRKIKGTYDVR TPPIHFACSDTVACTNITLSEIELL |
Full Sequence |
---|
Protein Sequence Length: 464 Download |
MSLIHGIFIL WITMILFIHN VEGRYHHKKP KKTSPAPSDP SPPSPSFPSD PYPYPNDPGE 60 SPSNCVFDVR SFGAVGDGDA DDTAAFRAAW KAACAVDSGV LLAPENYCFK ITSTIFSGPC 120 KPGLVFQIDG TLMAPDGPNC WPEADSKSQW LVFYRLDQMT LNGTGIIEGN GEQWWDLPCK 180 PHRSPDGKTV SGPCVSPTMI RFFMSSNLVL RGLKIQNSPQ FHVKFDGCQG VLIDELSISA 240 PKLSPNTDGI HLGNTRDVGI YNSLISNGDD CISIGPGCSN VNVDGVTCAP THGISIGSLG 300 VHNSHACVSN LTVRNSIIKE SDNGLRIKTW QGGTGSVTGL TFDNIQMENV RNCINIDQFY 360 CLSKECMNQT SAVYVNNISY RKIKGTYDVR TPPIHFACSD TVACTNITLS EIELLPYEGE 420 LVDDPFCWNA YGRQETLTIP PLDCLREGQP ETVVELSEYE CNN* 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-57 | 109 | 441 | 336 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 3.0e-62 | 99 | 445 | 353 | + Probable polygalacturonase At3g15720 | ||
PLN02218 | PLN02218 | 4.0e-80 | 101 | 414 | 317 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 3.0e-87 | 114 | 414 | 301 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 6.0e-99 | 101 | 441 | 343 | + Probable polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK95305.1 | 0 | 1 | 461 | 1 | 475 | AF410319_1 At1g48100/F21D18_17 [Arabidopsis thaliana] |
RefSeq | NP_175244.1 | 0 | 1 | 461 | 1 | 475 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002263668.1 | 0 | 1 | 461 | 1 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312305.1 | 0 | 1 | 461 | 1 | 482 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519290.1 | 0 | 1 | 461 | 1 | 479 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2iq7_G | 5e-22 | 170 | 414 | 73 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 5e-22 | 170 | 414 | 73 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 5e-22 | 170 | 414 | 73 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 5e-22 | 170 | 414 | 73 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_C | 5e-22 | 170 | 414 | 73 | 319 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |