Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g033970.1 |
Family | CE8 |
Protein Properties | Length: 351 Molecular Weight: 39251.7 Isoelectric Point: 9.0094 |
Chromosome | Chromosome/Scaffold: 2 Start: 11777031 End: 11779003 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 57 | 341 | 0 |
KVDINGNGEFKSVQAAIDSIPEGNSNWVIVHIRKGVYREKVHIPKNKRYIFMRGNGRGKTAIVWSESSSDNIASATFKVEAPDFIAFGISFKNDAPTGVA YTSQNQSVAAFVAAEKAAFYHCAFYSTHNTLFDYKGRHYYESCYIQGSIDFIFGRGRTIFQNCEIFVVDDKRISIRGSITAANRENESEMSGFIFIKGKV YGIGGVYLGRAKGPYSRVIFAKTYLSKTIVPEGWTNWSYDGSTEHLYHAEYKCHGPGAIAEKRASWSRQLSDEEAAPFISIDYID |
Full Sequence |
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Protein Sequence Length: 351 Download |
MVSFSSSCLS LSFSTFTMKL LIFILFFVPY CALAFDVKTV IDSPMLTQKI GTNRTIKVDI 60 NGNGEFKSVQ AAIDSIPEGN SNWVIVHIRK GVYREKVHIP KNKRYIFMRG NGRGKTAIVW 120 SESSSDNIAS ATFKVEAPDF IAFGISFKND APTGVAYTSQ NQSVAAFVAA EKAAFYHCAF 180 YSTHNTLFDY KGRHYYESCY IQGSIDFIFG RGRTIFQNCE IFVVDDKRIS IRGSITAANR 240 ENESEMSGFI FIKGKVYGIG GVYLGRAKGP YSRVIFAKTY LSKTIVPEGW TNWSYDGSTE 300 HLYHAEYKCH GPGAIAEKRA SWSRQLSDEE AAPFISIDYI DGKNWLPAWL * 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 1.0e-83 | 54 | 346 | 296 | + pectinesterase family protein | ||
PLN02497 | PLN02497 | 3.0e-84 | 54 | 346 | 296 | + probable pectinesterase | ||
PLN02432 | PLN02432 | 2.0e-85 | 56 | 346 | 291 | + putative pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-94 | 54 | 347 | 305 | + pectinesterase family protein | ||
PLN02480 | PLN02480 | 0 | 38 | 350 | 313 | + Probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACU23222.1 | 0 | 7 | 350 | 6 | 346 | unknown [Glycine max] |
RefSeq | NP_188331.1 | 0 | 21 | 350 | 7 | 340 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002272939.1 | 0 | 39 | 350 | 37 | 348 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002311381.1 | 0 | 38 | 349 | 31 | 341 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523016.1 | 0 | 32 | 350 | 33 | 350 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3.9937e-43 | 50 | 348 | 5 | 310 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 5e-35 | 61 | 346 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-19 | 66 | 347 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-19 | 66 | 347 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-19 | 66 | 347 | 18 | 339 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |