Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g042740.1 |
Family | GH28 |
Protein Properties | Length: 475 Molecular Weight: 53068.7 Isoelectric Point: 8.2019 |
Chromosome | Chromosome/Scaffold: 2 Start: 15554964 End: 15559258 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 86 | 434 | 0 |
RNQGGAQLNVPPGFWLTSPFNLTSRMTLFLARDAVILAVQDEKYWPLMPALPSYGYGREHPGPRYSSLIHGQNLKDVVITGHNGTINGQGQTWWTKHLHK LLNYTRGPLVQIMYSSDIVISNITLRDSPFWTLHPYDCKNVTIKNVTILAPVYHAPNTDGIDPDSCEDMLIEDCYISVGDDAIAIKSGWDQYGIAYAKPS KNIIIRNLVVRSNVSAGISIGSEMSGGVSNVTIENILVWESRRAIRIKTAPGRGGYVRQITYRNITFHNVRVGIVIKTDYNEHPDDGYDPTALPILRDIS FTNIRGEGVRVPVRITGSEEIPVRNVTFHDMNVGITYKKKHIFQCAFVE |
Full Sequence |
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Protein Sequence Length: 475 Download |
MVFSSPHKST SFFFVFLIIA ALGSVFLVWQ RNVINGFLVL GEELNWEAPK LRPVVFNLTD 60 FGGVGDGVTL NTKAFERAVS VISKFRNQGG AQLNVPPGFW LTSPFNLTSR MTLFLARDAV 120 ILAVQDEKYW PLMPALPSYG YGREHPGPRY SSLIHGQNLK DVVITGHNGT INGQGQTWWT 180 KHLHKLLNYT RGPLVQIMYS SDIVISNITL RDSPFWTLHP YDCKNVTIKN VTILAPVYHA 240 PNTDGIDPDS CEDMLIEDCY ISVGDDAIAI KSGWDQYGIA YAKPSKNIII RNLVVRSNVS 300 AGISIGSEMS GGVSNVTIEN ILVWESRRAI RIKTAPGRGG YVRQITYRNI TFHNVRVGIV 360 IKTDYNEHPD DGYDPTALPI LRDISFTNIR GEGVRVPVRI TGSEEIPVRN VTFHDMNVGI 420 TYKKKHIFQC AFVEGRVIGT IFPKPCRNFD QYNEQGELVK QAVSQNVTDI DYEI* 480 |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
PLN03010 | PLN03010 | 1.0e-25 | 56 | 448 | 408 | + polygalacturonase |
PLN03003 | PLN03003 | 4.0e-31 | 56 | 418 | 374 | + Probable polygalacturonase At3g15720 |
PLN02793 | PLN02793 | 1.0e-32 | 33 | 451 | 436 | + Probable polygalacturonase |
pfam00295 | Glyco_hydro_28 | 1.0e-40 | 154 | 425 | 278 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. |
COG5434 | PGU1 | 2.0e-63 | 55 | 410 | 395 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN69988.1 | 0 | 2 | 473 | 25 | 508 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002277239.1 | 0 | 2 | 473 | 25 | 492 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002324728.1 | 0 | 2 | 473 | 26 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002326133.1 | 0 | 2 | 473 | 26 | 494 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002516244.1 | 0 | 3 | 473 | 25 | 493 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 49 | 415 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 49 | 415 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 49 | 415 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 49 | 415 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 5e-19 | 100 | 401 | 52 | 355 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |