Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g058640.1 |
Family | GH28 |
Protein Properties | Length: 408 Molecular Weight: 42674.9 Isoelectric Point: 8.364 |
Chromosome | Chromosome/Scaffold: 2 Start: 18091682 End: 18093304 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 47 | 383 | 0 |
KEACASTTASKIVIPGGTYKMGGIELKGPCKAPIEVQVDGTIQAPADPSQIKAADQWVKFLYMEHLTLSGKGVFDGQGATAYKQAQPAAAWSGKKSNVKI LMNLGFMFVNNSMVTGVTSKDSKNFHVMVLGCNNFTFDGFTVTAPSDSPNTDGIHMGRSTDVKILNTNIGTGDDCVSLGDGSRKITVQGVKCGPGHGISV GSLGRYTTEDNVEGVTVKNCTLTATQNGVRIKTWPDAPGTITVSDIHFEDITMNNVTNPIIIDQEYCPWNACNKKVPSKVKLSKISFKNIQGTSGAPEGV VLVCSSAVPCDGVELNNVDVKFNGKPAIAKCSNVKPT |
Full Sequence |
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Protein Sequence Length: 408 Download |
MKFSTAIIVS FLFLAEFCAV QSLVLDISKF GGAPNSDITL ALGNAWKEAC ASTTASKIVI 60 PGGTYKMGGI ELKGPCKAPI EVQVDGTIQA PADPSQIKAA DQWVKFLYME HLTLSGKGVF 120 DGQGATAYKQ AQPAAAWSGK KSNVKILMNL GFMFVNNSMV TGVTSKDSKN FHVMVLGCNN 180 FTFDGFTVTA PSDSPNTDGI HMGRSTDVKI LNTNIGTGDD CVSLGDGSRK ITVQGVKCGP 240 GHGISVGSLG RYTTEDNVEG VTVKNCTLTA TQNGVRIKTW PDAPGTITVS DIHFEDITMN 300 NVTNPIIIDQ EYCPWNACNK KVPSKVKLSK ISFKNIQGTS GAPEGVVLVC SSAVPCDGVE 360 LNNVDVKFNG KPAIAKCSNV KPTVTGTAPA CQAPGAVPAA GRKSPAK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 2.0e-71 | 25 | 391 | 373 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-74 | 24 | 371 | 363 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 1.0e-79 | 6 | 379 | 380 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 3.0e-109 | 50 | 381 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-118 | 22 | 387 | 371 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 407 | 1 | 407 | polygalactorunase PG11 precursor [Medicago sativa] |
GenBank | ACK38189.1 | 0 | 1 | 254 | 1 | 254 | unknown [Medicago truncatula] |
EMBL | CAA72003.1 | 0 | 2 | 391 | 4 | 389 | polygalacturonase [Medicago sativa] |
EMBL | CAF07050.1 | 0 | 1 | 342 | 3 | 340 | polygalacturonase precursor [Medicago truncatula] |
Swiss-Prot | Q40312 | 0 | 1 | 407 | 1 | 421 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-18 | 98 | 349 | 97 | 343 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 9e-16 | 196 | 391 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-16 | 196 | 391 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 9e-16 | 196 | 391 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 9e-16 | 196 | 391 | 153 | 339 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |