Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g058670.1 |
Family | GH28 |
Protein Properties | Length: 420 Molecular Weight: 43553.8 Isoelectric Point: 8.2449 |
Chromosome | Chromosome/Scaffold: 2 Start: 18103193 End: 18105021 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 46 | 382 | 0 |
WKEACASTTAAKIVIPAGTYQLNGIELKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGASVYKKAQPAAAWSGKGGNSK NFMNFGFNFVNNSLVHGVTSKDSKNFHVMVFGCNNITFDSFTITAPGDSPNTDGIHMGKSTGVKILNTNIGTGDDCVSIGDGSKQITVEGVKCGPGHGLS IGSLGKFTTEENVEGITIKNCTLTATDNGVRIKTWPDAPGTITVSDIHFEDITMTNVKNPVIIDQEYCPWNACSKKNPSKIKLSKITFKNVKGTSGTAEG VVLICSSAVPCDGVELNNVDLKFNGAPTTAKCTNVKP |
Full Sequence |
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Protein Sequence Length: 420 Download |
MKFSTVIIVS FLFLADFCAA QSGVLDIAKF GGKPNSDIGM ALTAAWKEAC ASTTAAKIVI 60 PAGTYQLNGI ELKGPCKAPI ELQVDGTIQA PADPSVIKGT EQWFKFLYMD HLTLSGKGVF 120 DGQGASVYKK AQPAAAWSGK GGNSKNFMNF GFNFVNNSLV HGVTSKDSKN FHVMVFGCNN 180 ITFDSFTITA PGDSPNTDGI HMGKSTGVKI LNTNIGTGDD CVSIGDGSKQ ITVEGVKCGP 240 GHGLSIGSLG KFTTEENVEG ITIKNCTLTA TDNGVRIKTW PDAPGTITVS DIHFEDITMT 300 NVKNPVIIDQ EYCPWNACSK KNPSKIKLSK ITFKNVKGTS GTAEGVVLIC SSAVPCDGVE 360 LNNVDLKFNG APTTAKCTNV KPIVTGTAPV CQAPGAAPAA STTASPAAGK APAGKSPAK* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02218 | PLN02218 | 1.0e-71 | 25 | 391 | 379 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 3.0e-78 | 24 | 377 | 371 | + Probable polygalacturonase | ||
PLN02155 | PLN02155 | 3.0e-81 | 7 | 379 | 381 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 2.0e-104 | 50 | 381 | 336 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-109 | 26 | 387 | 366 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO62938.1 | 0 | 1 | 419 | 1 | 407 | polygalactorunase PG11 precursor [Medicago sativa] |
GenBank | ACK38189.1 | 0 | 1 | 254 | 1 | 254 | unknown [Medicago truncatula] |
DDBJ | BAA89478.1 | 0 | 1 | 386 | 3 | 386 | polygalacturonase [Salix gilgiana] |
EMBL | CAA72003.1 | 0 | 2 | 397 | 4 | 395 | polygalacturonase [Medicago sativa] |
Swiss-Prot | Q40312 | 0 | 1 | 413 | 1 | 420 | PGLR_MEDSA RecName: Full=Polygalacturonase; Short=PG; AltName: Full=Pectinase; Flags: Precursor |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 1e-20 | 137 | 380 | 92 | 333 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
PDB | 1ib4_A | 1e-20 | 137 | 380 | 92 | 333 | A Chain A, High Resolution Structure Of E.coli Wrba With Fmn |
PDB | 1ia5_A | 1e-20 | 137 | 380 | 92 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 2iq7_G | 9e-20 | 47 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 9e-20 | 47 | 380 | 15 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |