Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g060350.1 |
Family | GH28 |
Protein Properties | Length: 445 Molecular Weight: 49864.2 Isoelectric Point: 7.5777 |
Chromosome | Chromosome/Scaffold: 2 Start: 18887644 End: 18891154 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 99 | 430 | 0 |
ACSKGYVLVVPKNRIYRLKPITFSGPCQPNTAFMLYGTIEAWSQMSAYEEDRQHWIVFDSVSNFKVDGGGTFNGNGKKWWENSCKYSNNNLPCNDEPRPT AVTFYDCKNLKVKNLRFKDSQQMHVVFERCFNVFVSNLIVRAPEDSPNTDGIHVAETQNIDIINCDIGTGDDCISIVSGSKNVRAIDITCGPGHGISIGS LGADNSEAEVSNVVVNRAALTGTTNGVRIKTWQGGSGYARNIKFMNIKMQNVTNPVIIDQYYCDQTEPCQERNKAVQLSQVLYQNIRGTSASEIAIKFNC SRSVPCREIYLQDVILEPEGGGGTTATCENVR |
Full Sequence |
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Protein Sequence Length: 445 Download |
MYQEKTIITL LMIFLASLFI CNGSYIVEPH HQANVERYYH VHDGRLIKTK HQHFGHITRT 60 NRDTLFSSKS QGMVSVDDFG ARADGRDDWE AFKKAWNEAC SKGYVLVVPK NRIYRLKPIT 120 FSGPCQPNTA FMLYGTIEAW SQMSAYEEDR QHWIVFDSVS NFKVDGGGTF NGNGKKWWEN 180 SCKYSNNNLP CNDEPRPTAV TFYDCKNLKV KNLRFKDSQQ MHVVFERCFN VFVSNLIVRA 240 PEDSPNTDGI HVAETQNIDI INCDIGTGDD CISIVSGSKN VRAIDITCGP GHGISIGSLG 300 ADNSEAEVSN VVVNRAALTG TTNGVRIKTW QGGSGYARNI KFMNIKMQNV TNPVIIDQYY 360 CDQTEPCQER NKAVQLSQVL YQNIRGTSAS EIAIKFNCSR SVPCREIYLQ DVILEPEGGG 420 GTTATCENVR YVNRGKFYPQ CSPQ* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-85 | 90 | 430 | 347 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 2.0e-87 | 90 | 430 | 349 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-110 | 100 | 429 | 332 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 5.0e-122 | 90 | 439 | 353 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 6.0e-129 | 90 | 442 | 357 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC70314.1 | 0 | 11 | 443 | 10 | 440 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002308956.1 | 0 | 37 | 441 | 32 | 442 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002313308.1 | 0 | 70 | 442 | 5 | 376 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 21 | 441 | 23 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529616.1 | 0 | 67 | 441 | 101 | 473 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 2e-22 | 153 | 417 | 102 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 4e-18 | 167 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 4e-18 | 167 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 4e-18 | 167 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 4e-18 | 167 | 429 | 77 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |