Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr2g103650.1 |
Family | GH28 |
Protein Properties | Length: 405 Molecular Weight: 44002 Isoelectric Point: 9.8843 |
Chromosome | Chromosome/Scaffold: 2 Start: 33711154 End: 33714737 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 53 | 391 | 0 |
DVCNSKSGTSRLIIPAAKTFLLRPIAFRGPCKSNYIYIELSGNIIAPKTKSEYSGSPINTWIGFSFVNGLIISGKGTVDGRGSMWWKQPCIGNPPPGTSC RPPTAITLNRCYRFQIKGYTSINPARSHITLTSCKKGIISNIRLIAPGESPNTDGIDISASRDIQVLNSFIATGDDCIAISAGSSVIKITAITCGPGHGI SIGSLGARGDTDIVEDVHVKNCTLTETLTGVRIKTKQGGGGFARRITFENIKFVRAHNPIWIDQFYCVNQMVCRNMTKAIKVSDVTYRGISGTSLTDKAI NLNCDQNVGCSNLVFDRVYVRSAVPKMKVFSFCHNAHGR |
Full Sequence |
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Protein Sequence Length: 405 Download |
MFHTMEYFFT LLMILSMFKL GLSITTTFNV LQYGAVGDGK TNDSPAFLKA WKDVCNSKSG 60 TSRLIIPAAK TFLLRPIAFR GPCKSNYIYI ELSGNIIAPK TKSEYSGSPI NTWIGFSFVN 120 GLIISGKGTV DGRGSMWWKQ PCIGNPPPGT SCRPPTAITL NRCYRFQIKG YTSINPARSH 180 ITLTSCKKGI ISNIRLIAPG ESPNTDGIDI SASRDIQVLN SFIATGDDCI AISAGSSVIK 240 ITAITCGPGH GISIGSLGAR GDTDIVEDVH VKNCTLTETL TGVRIKTKQG GGGFARRITF 300 ENIKFVRAHN PIWIDQFYCV NQMVCRNMTK AIKVSDVTYR GISGTSLTDK AINLNCDQNV 360 GCSNLVFDRV YVRSAVPKMK VFSFCHNAHG RASHTKPILN CLLK* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 1.0e-81 | 20 | 391 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 2.0e-92 | 11 | 373 | 366 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-93 | 10 | 402 | 398 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 4.0e-109 | 4 | 402 | 402 | + polygalacturonase | ||
PLN02793 | PLN02793 | 3.0e-110 | 28 | 401 | 378 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD28723.1 | 0 | 13 | 404 | 1 | 392 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CAN62658.1 | 0 | 3 | 404 | 23 | 435 | hypothetical protein [Vitis vinifera] |
EMBL | CBI36306.1 | 0 | 1 | 404 | 90 | 495 | unnamed protein product [Vitis vinifera] |
EMBL | CBI36306.1 | 0.0000001 | 328 | 399 | 20 | 90 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266797.1 | 0 | 25 | 404 | 15 | 374 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-17 | 62 | 354 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-17 | 62 | 354 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-17 | 62 | 354 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-17 | 62 | 354 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-17 | 62 | 354 | 24 | 299 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |