Basic Information | |
---|---|
Species | Medicago truncatula |
Cazyme ID | Medtr3g009760.1 |
Family | AA7 |
Protein Properties | Length: 527 Molecular Weight: 59251.3 Isoelectric Point: 7.8824 |
Chromosome | Chromosome/Scaffold: 3 Start: 2085407 End: 2087547 |
Description | FAD-binding Berberine family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
AA7 | 71 | 293 | 0 |
SSKPLLIMTPSHESEIQSAILCSKEIGVQIRVVSGGHDYEGLSYLCKTPFIMIDLINIRSIEINLADESAWIQAGATLGELYYKISKASKVHAFPAGICP SVGIGGHISGGGFGTLVRKHGLAADHVVDAHLIDVNGKILDRKSMGEDVFWAIRGGSATSFGIVLAWKIRLVRVPPTVTVFTIQKTLEQGGTKLLHRWQY IEDKLHEDLFIRIIAKNSGANSK |
Full Sequence |
---|
Protein Sequence Length: 527 Download |
MAYLAVFLIL SLSISCASST SVEKSFMQCI LTIGSSFSES SENTLFINSS SILYPQVLES 60 LKQNPRWVNS SSKPLLIMTP SHESEIQSAI LCSKEIGVQI RVVSGGHDYE GLSYLCKTPF 120 IMIDLINIRS IEINLADESA WIQAGATLGE LYYKISKASK VHAFPAGICP SVGIGGHISG 180 GGFGTLVRKH GLAADHVVDA HLIDVNGKIL DRKSMGEDVF WAIRGGSATS FGIVLAWKIR 240 LVRVPPTVTV FTIQKTLEQG GTKLLHRWQY IEDKLHEDLF IRIIAKNSGA NSKTILTMFN 300 SLFLGEKDNL IRIMNESFPE LGLQEKDCIE MSWIQSVSYF AGFNKDDPIE LLLNRIVTFK 360 SPFKAKSDYV KEPIPETGLE GIWKMLLKED TLALLIMEPY GGRLNEISES EIPFPHRKGN 420 LFNIQYFVQW EVNSIEESNK HIKWMRMLYG YMTPYVSKSP RAAYYNYRDL DLGSNKHDNT 480 SYSEASVWGI KYFKGNFKRL AQIKTKFDPQ NFFRNEQSIP LLNSLP* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG0277 | GlcD | 3.0e-16 | 55 | 522 | 488 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
pfam08031 | BBE | 2.0e-18 | 463 | 520 | 58 | + Berberine and berberine like. This domain is found in the berberine bridge and berberine bridge- like enzymes which are involved in the biosynthesis of numerous isoquinoline alkaloids. They catalyze the transformation of the N-methyl group of (S)-reticuline into the C-8 berberine bridge carbon of (S)-scoulerine. | ||
pfam01565 | FAD_binding_4 | 2.0e-18 | 74 | 211 | 140 | + FAD binding domain. This family consists of various enzymes that use FAD as a co-factor, most of the enzymes are similar to oxygen oxidoreductase. One of the enzymes Vanillyl-alcohol oxidase (VAO) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyzes the oxidation of a wide variety of substrates, ranging form aromatic amines to 4-alkylphenols. Other members of this family include D-lactate dehydrogenase, this enzyme catalyzes the conversion of D-lactate to pyruvate using FAD as a co-factor; mitomycin radical oxidase, this enzyme oxidises the reduced form of mitomycins and is involved in mitomycin resistance. This family includes MurB an UDP-N-acetylenolpyruvoylglucosamine reductase enzyme EC:1.1.1.158. This enzyme is involved in the biosynthesis of peptidoglycan. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
GO:0016491 | oxidoreductase activity |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABC41950.1 | 0 | 1 | 524 | 3 | 525 | FAD-linked oxidoreductase 1 [Glycine max] |
GenBank | ABC41951.1 | 0 | 1 | 524 | 3 | 526 | FAD-linked oxidoreductase 2 [Glycine max] |
RefSeq | XP_002267029.1 | 0 | 4 | 522 | 251 | 770 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002330615.1 | 0 | 19 | 524 | 28 | 534 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002523167.1 | 0 | 6 | 520 | 6 | 522 | Reticuline oxidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3vte_A | 0 | 53 | 522 | 32 | 513 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_B | 0 | 21 | 522 | 6 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsj_A | 0 | 21 | 522 | 6 | 496 | A Chain A, Crystal Structure Of Tetrahydrocannabinolic Acid Synthase From Cannabis Sativa |
PDB | 3tsh_A | 0 | 21 | 522 | 6 | 496 | A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With Glucose Dehydrogenase Activity |
PDB | 4dns_B | 0 | 19 | 522 | 6 | 496 | A Chain A, Crystal Structure Of Bermuda Grass Isoallergen Bg60 Provides Insight Into The Various Cross-Allergenicity Of The Pollen Group 4 Allergens |