Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g030540.1 |
Family | GH28 |
Protein Properties | Length: 438 Molecular Weight: 47953.2 Isoelectric Point: 8.5722 |
Chromosome | Chromosome/Scaffold: 3 Start: 9096804 End: 9100965 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 96 | 426 | 0 |
ACSNGKVLVVPKQSVYHLNPITFSGPCQPNTALKIYGTIKAWPRISAYGADRKLWIKFENVTNLIVDGGGTINGNGRIWWENSCKVNESLPCKGAPTAVT FDECNNLKVDKIRFRNAQQMHLRIQGCNNVWASNLIVTAPGHSPNTDGIHITHSQNVFITNSTIGTGDDCISIVSGSKNVRATDITCGPGHGISIGSLGG GNTQAEVSNVEVNRATLIGTTNGVRIKTWQGGSGYARNIKFINIVVRNVTNPIIIDQKYCDQKKKCQEQNSAVELSNVMYQNIKGTSASEVAIKLECSKA VPCKGIHLQDVKITGENIKDTIAKCDNVKYS |
Full Sequence |
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Protein Sequence Length: 438 Download |
MYSQSLTLSL FTILASFGLC FGSYLEERHY STNHQPYNER LVKPRHEQFS FMARAHHPSI 60 APSPQSHNTV NVNDYGAKSN DGQVDNEAFE MAWNEACSNG KVLVVPKQSV YHLNPITFSG 120 PCQPNTALKI YGTIKAWPRI SAYGADRKLW IKFENVTNLI VDGGGTINGN GRIWWENSCK 180 VNESLPCKGA PTAVTFDECN NLKVDKIRFR NAQQMHLRIQ GCNNVWASNL IVTAPGHSPN 240 TDGIHITHSQ NVFITNSTIG TGDDCISIVS GSKNVRATDI TCGPGHGISI GSLGGGNTQA 300 EVSNVEVNRA TLIGTTNGVR IKTWQGGSGY ARNIKFINIV VRNVTNPIII DQKYCDQKKK 360 CQEQNSAVEL SNVMYQNIKG TSASEVAIKL ECSKAVPCKG IHLQDVKITG ENIKDTIAKC 420 DNVKYSNSGM FFPKCHP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 5.0e-77 | 71 | 428 | 364 | + polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-89 | 69 | 436 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
pfam00295 | Glyco_hydro_28 | 1.0e-95 | 97 | 428 | 334 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02793 | PLN02793 | 8.0e-110 | 50 | 433 | 388 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-116 | 3 | 435 | 438 | + polygalacturonase ADPG |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC26512.1 | 0 | 5 | 435 | 14 | 458 | polygalacturonase precursor [Cucumis melo] |
GenBank | ABC70314.1 | 0 | 1 | 437 | 1 | 440 | polygalacturonase precursor [Glycine max] |
RefSeq | XP_002282759.1 | 0 | 10 | 435 | 11 | 441 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002313308.1 | 0 | 66 | 435 | 5 | 375 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002517823.1 | 0 | 20 | 435 | 23 | 446 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 3e-22 | 150 | 411 | 102 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1nhc_F | 1e-17 | 151 | 423 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 1e-17 | 151 | 423 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 1e-17 | 151 | 423 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 1e-17 | 151 | 423 | 63 | 330 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |