| Basic Information | |
|---|---|
| Species | Medicago truncatula |
| Cazyme ID | Medtr3g030900.1 |
| Family | PL1 |
| Protein Properties | Length: 374 Molecular Weight: 42031 Isoelectric Point: 9.3853 |
| Chromosome | Chromosome/Scaffold: 3 Start: 9239769 End: 9241521 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL1 | 94 | 292 | 0 |
| ITFKRNMNIKLVRPLLISSFTTIDGRGVDVHIADNACLMIYKTTNIIIHGIRVHHCQPQAPGMVMGPDGKIISLGQVDGDAIRLVSASKIWIDHNTLYDC QDGLLDVTRGSTDITISNNWFREQNKVMLLGHDDGFVRDKNMKVTVVYNYFGPNCHQHMPRIRHGYAHVANNLYMGWVQYAIGGSMEPSLKSQSNLFIA | |||
| Full Sequence |
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| Protein Sequence Length: 374 Download |
| MLTFFKTNAS SFQKTKIEDK EMNVIDQCWR FNPEWRKHRQ QLAVCSVGYV GKMTNNIGKD 60 LIHYKVTDPS DHPLNPAPGT LRYGASRIQG KVWITFKRNM NIKLVRPLLI SSFTTIDGRG 120 VDVHIADNAC LMIYKTTNII IHGIRVHHCQ PQAPGMVMGP DGKIISLGQV DGDAIRLVSA 180 SKIWIDHNTL YDCQDGLLDV TRGSTDITIS NNWFREQNKV MLLGHDDGFV RDKNMKVTVV 240 YNYFGPNCHQ HMPRIRHGYA HVANNLYMGW VQYAIGGSME PSLKSQSNLF IAPSRGKKEV 300 TWRKSSNEIG DTWEFYSVGD AFENGASFVE TKGGQVTKPN YSPEQNFKVV DAKYVRSLTS 360 SSGVLQCSKT SIC* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3866 | PelB | 1.0e-22 | 110 | 307 | 220 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
| pfam00544 | Pec_lyase_C | 2.0e-51 | 112 | 290 | 187 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
| smart00656 | Amb_all | 8.0e-63 | 99 | 294 | 207 | + Amb_all domain. | ||
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI26401.1 | 0 | 53 | 373 | 1 | 320 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002267384.1 | 0 | 22 | 373 | 19 | 369 | PREDICTED: similar to putative Cup s 1 pollen allergen [Vitis vinifera] |
| RefSeq | XP_002299118.1 | 0 | 22 | 373 | 1 | 354 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304865.1 | 0 | 22 | 373 | 1 | 352 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527354.1 | 0 | 20 | 300 | 27 | 307 | Major pollen allergen Jun v 1 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1pxz_B | 0 | 23 | 365 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1pxz_A | 0 | 23 | 365 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
| PDB | 1vbl_A | 0.00000000000003 | 108 | 290 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
| PDB | 3zsc_A | 0.00000000000009 | 89 | 281 | 45 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| PDB | 3vmw_A | 0.0000000000004 | 127 | 364 | 93 | 322 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| DT575750 | 225 | 144 | 368 | 0 |
| DR808308 | 255 | 23 | 270 | 0 |
| FD757999 | 216 | 106 | 321 | 0 |
| HO778688 | 357 | 23 | 374 | 0 |
| EL457563 | 284 | 23 | 303 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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