y
Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g048280.1 |
Family | CBM43 |
Protein Properties | Length: 208 Molecular Weight: 22209.7 Isoelectric Point: 6.8563 |
Chromosome | Chromosome/Scaffold: 3 Start: 14290033 End: 14291746 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 112 | 191 | 4e-33 |
WCIASPSASQRSLQVALDYACGYGGTDCSAIQPGGSCYNPNSVHDHASFAFNKYYQKNPVPNSCNFGGNAVLTNTNPSKA |
Full Sequence |
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Protein Sequence Length: 208 Download |
MERSVNYYIL LLLLAHFLCS GYSETNKEAH GHVTQVNPQS HKEKLLEFKA PISTTQRDIT 60 TPITTIPNLV PTISTSPILN PDSNPDTYSP SSTVPITAPS TSNSPVSSGA SWCIASPSAS 120 QRSLQVALDY ACGYGGTDCS AIQPGGSCYN PNSVHDHASF AFNKYYQKNP VPNSCNFGGN 180 AVLTNTNPSK ASTIYDHGFK LQSDTTM* 240 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 5.0e-22 | 111 | 182 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 1.0e-32 | 111 | 195 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 4.99983e-42 | 31 | 195 | 26 | 192 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
GenBank | EEE64827.1 | 1.99993e-41 | 31 | 195 | 26 | 192 | hypothetical protein OsJ_19684 [Oryza sativa Japonica Group] |
RefSeq | NP_001056434.1 | 2e-40 | 31 | 188 | 26 | 185 | Os05g0581900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002283721.1 | 1.99965e-42 | 1 | 195 | 1 | 182 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002307548.1 | 9.99995e-41 | 109 | 188 | 1 | 80 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 0.000000000000001 | 108 | 198 | 9 | 99 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |