Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g084360.1 |
Family | GH28 |
Protein Properties | Length: 401 Molecular Weight: 43185 Isoelectric Point: 7.6592 |
Chromosome | Chromosome/Scaffold: 3 Start: 27365389 End: 27367263 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 60 | 389 | 0 |
CGSTQGTPTLIIPGGKKFMLQPSSFQGPCKSSTVKVMMMGTIIAPQSSGKWKWDSRDDDAWISFSHIKGLIISGEGTFDGQGASWWKNYNDHGRPTALQF LGCDNLKLGPLRHIDSPKNHISIVDCNGALISHLHIIAPENSPNTDGIDISRSTNIIIEHSTISTGDDCIAINSGSKFINITAINCGPGHGISVGSLGKD GKYATVEEVHVSHSIFTGTENGARIKTWTAGTGYARKITYEDITLIKVNNPIIIDQHYDALESVSDSVRKGVKVSDVTFRGFRGTANEKDAIELNCARIG CTNIVLENINIAGLGGEKPSASCNNVQGSC |
Full Sequence |
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Protein Sequence Length: 401 Download |
MKLLFVLYLM SLFVSPISCF RLVNRKPLAQ KSFNVVNYGA KGDSNTDDSN AFLKAWQEVC 60 GSTQGTPTLI IPGGKKFMLQ PSSFQGPCKS STVKVMMMGT IIAPQSSGKW KWDSRDDDAW 120 ISFSHIKGLI ISGEGTFDGQ GASWWKNYND HGRPTALQFL GCDNLKLGPL RHIDSPKNHI 180 SIVDCNGALI SHLHIIAPEN SPNTDGIDIS RSTNIIIEHS TISTGDDCIA INSGSKFINI 240 TAINCGPGHG ISVGSLGKDG KYATVEEVHV SHSIFTGTEN GARIKTWTAG TGYARKITYE 300 DITLIKVNNP IIIDQHYDAL ESVSDSVRKG VKVSDVTFRG FRGTANEKDA IELNCARIGC 360 TNIVLENINI AGLGGEKPSA SCNNVQGSCS SCNPNVPCFH * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 5.0e-88 | 60 | 391 | 338 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 2.0e-92 | 33 | 398 | 376 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02793 | PLN02793 | 7.0e-94 | 26 | 399 | 384 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 2.0e-118 | 32 | 399 | 374 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 1.0e-133 | 19 | 399 | 382 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAY21049.1 | 0 | 1 | 399 | 1 | 396 | PGN [Glycine max] |
GenBank | ABC75354.1 | 0 | 1 | 399 | 1 | 394 | Glycoside hydrolase, family 28 [Medicago truncatula] |
EMBL | CAA20037.1 | 0 | 19 | 399 | 5 | 368 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 399 | 1 | 388 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002324855.1 | 0 | 30 | 399 | 24 | 394 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 2e-26 | 137 | 392 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-26 | 137 | 392 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-26 | 137 | 392 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 2e-26 | 137 | 392 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 2e-26 | 137 | 392 | 80 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |