Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g086310.1 |
Family | PL1 |
Protein Properties | Length: 404 Molecular Weight: 44614.6 Isoelectric Point: 9.1435 |
Chromosome | Chromosome/Scaffold: 3 Start: 28351334 End: 28352965 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 124 | 323 | 0 |
IIFKRDMVIKLKQELMMNSFKTIDGRGTNVHIAGGPCITVQFVTNIIIHGINIHDCKRGGNTYVRDTPTHYGFRTLSDGDGVSIFGGSHVWVDHCSLSNC RDGLIDVIHGSTAITISNNFMTHHNKVMLLGHSDSFTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWRMYAIGGSANPTINSQGNRFLAS |
Full Sequence |
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Protein Sequence Length: 404 Download |
MAVPLTYMLL LSLLLFVPSF IQSSPLQDPE LVVQDVQKSI NDSRRNLAFL SCGSGNPIDD 60 CWRCDKNWEK NRQRLADCAI GFGKHAIGGR DGKIYVVTDP GDHAVNPKPG TLRYGVIQEE 120 PLWIIFKRDM VIKLKQELMM NSFKTIDGRG TNVHIAGGPC ITVQFVTNII IHGINIHDCK 180 RGGNTYVRDT PTHYGFRTLS DGDGVSIFGG SHVWVDHCSL SNCRDGLIDV IHGSTAITIS 240 NNFMTHHNKV MLLGHSDSFT RDKNMQVTIA FNHFGEGLVQ RMPRCRHGYF HVVNNDYTHW 300 RMYAIGGSAN PTINSQGNRF LASNDNTFKE VTKRENAGQS QWKNWNWRSS GDLMLNGAFF 360 RPSGAGSSSS YARASSLAAK PSSLVASLTA SAGSLNCRKG SRC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-25 | 142 | 320 | 191 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-69 | 135 | 320 | 209 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 4.0e-79 | 129 | 324 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM67091.1 | 0 | 18 | 403 | 20 | 406 | putative pectate lyase [Arabidopsis thaliana] |
EMBL | CAN76500.1 | 0 | 18 | 403 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 18 | 403 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_564906.1 | 0 | 18 | 403 | 22 | 408 | pectate lyase family protein [Arabidopsis thaliana] |
RefSeq | XP_002275781.1 | 0 | 18 | 403 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 56 | 393 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 56 | 393 | 2 | 343 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 3e-17 | 124 | 322 | 50 | 248 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000005 | 133 | 394 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000005 | 133 | 394 | 78 | 358 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |