Basic Information | |
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Species | Medicago truncatula |
Cazyme ID | Medtr3g086320.1 |
Family | PL1 |
Protein Properties | Length: 441 Molecular Weight: 49654.2 Isoelectric Point: 7.8017 |
Chromosome | Chromosome/Scaffold: 3 Start: 28357467 End: 28359446 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 150 | 356 | 0 |
VIQQEPLWIIFKHDMVIKLKMDLLMNSFKTIDGRGVNVHIAEGPCIRIQEKTNIIIHGIHIHHCVRGGSGYVSDSPNHRVRKERSDGDGITIYGAAHIWV DHCSLSNCFDGLIDVVHGSTAVTISNNYMTRHNKVMLFGHSDSYEGDKNMQATIAFNHFGEGLGGRMPRCRFGYFHVVNNDYTHWQQYAIGGSSSPTIFS QGNRFLA |
Full Sequence |
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Protein Sequence Length: 441 Download |
MAFATILVFH FLLLAPVLIY SSHHVEDPES VVQQVQKMID LFMHSLVYVN KYVNNSEHNI 60 SFLFVSIYRS IIENQNRRKL GYYDACGTNN PIDDCWRCDP NWENNRKRLA ECAIGFGRRA 120 IGGKDGKYYM VIDSSDDPVN PKPGTLRHAV IQQEPLWIIF KHDMVIKLKM DLLMNSFKTI 180 DGRGVNVHIA EGPCIRIQEK TNIIIHGIHI HHCVRGGSGY VSDSPNHRVR KERSDGDGIT 240 IYGAAHIWVD HCSLSNCFDG LIDVVHGSTA VTISNNYMTR HNKVMLFGHS DSYEGDKNMQ 300 ATIAFNHFGE GLGGRMPRCR FGYFHVVNND YTHWQQYAIG GSSSPTIFSQ GNRFLAPDDD 360 DHKEITKHFY SSKGEWENWN WRSEGDLMLN GAYFTPSGAG ASSSTYAKAS SMSARPPMLV 420 ASMTAGAGVL RCKKGYQCYY * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 3.0e-24 | 237 | 391 | 168 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 2.0e-58 | 174 | 354 | 190 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 7.0e-68 | 163 | 358 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAI94495.1 | 0 | 1 | 438 | 1 | 407 | pectate lyase [Dianthus caryophyllus] |
EMBL | CAN76500.1 | 0 | 16 | 438 | 17 | 403 | hypothetical protein [Vitis vinifera] |
EMBL | CBI14899.1 | 0 | 16 | 438 | 17 | 403 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002275781.1 | 0 | 16 | 438 | 72 | 458 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300069.1 | 0 | 3 | 438 | 4 | 403 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 89 | 430 | 1 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 89 | 430 | 1 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-17 | 158 | 345 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_B | 0.000000000000005 | 167 | 428 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1pe9_A | 0.000000000000005 | 167 | 428 | 78 | 357 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |